Rice gene details
Searching for LOC_Os02g53340 [cyclic nucleotide-gated ion channel, putative, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0006810 transport (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQE012 filled grain number
2 AQQ006 grain yield
3 AQQ002 grain yield
4 AQEX029 total biomass yield
5 AQEX022 root dry weight
6 AQEX016 biomass yield
7 AQCB015 seed set percent
8 AQFE070 100-grain weight
9 AQFE069 100-grain weight
10 CQAB18 plant height
11 CQAB17 plant height
12 CQAB16 plant height
13 CQAB15 plant height
14 AQBC008 plant height
15 AQBC007 plant height
16 AQBC006 plant height
17 AQBB071 plant height
18 AQBB070 plant height
19 AQBB069 plant height
20 AQBB068 plant height
21 AQBB066 plant height
22 AQBB067 plant height
23 AQBB065 plant height
24 AQBB063 plant height
25 AQBB064 plant height
26 AQBB062 plant height
27 AQBB061 plant height
28 AQBB060 plant height
29 AQBB059 plant height
30 AQBB057 plant height
31 AQBB058 plant height
32 AQBB056 plant height
33 AQBB055 plant height
34 AQBB054 plant height
35 AQBB052 plant height
36 AQBB053 plant height
37 AQBB051 plant height
38 AQBB050 plant height
39 AQBB049 plant height
40 AQBB048 plant height
41 AQBB047 plant height
42 AQBB046 plant height
43 AQBB045 plant height
44 AQBB044 plant height
45 AQBB043 plant height
46 AQBB042 plant height
47 AQBB041 plant height
48 AQBB040 plant height
49 AQBB039 plant height
50 AQJ005 panicle number
51 AQO089 root number
52 AQO070 root length
53 CQE14 days to heading
54 AQCK006 days to heading
55 AQFQ002 primary branch
56 AQFQ001 flower number
57 AQDQ014 panicle length
58 AQDQ012 plant height
59 AQDQ013 panicle length
60 AQDQ010 plant height
61 AQDQ011 plant height
62 AQFE114 tiller angle
63 AQED049 grain yield per plant
64 AQED031 grain number
65 AQCR002 grain yield
66 AQFE052 panicle length
67 AQED039 grain number
68 AQEO014 seed width
69 AQDS077 plant height
70 CQN59 spikelet weight
71 AQEB010 1000-seed weight
72 AQEB005 1000-seed weight
73 AQEB001 1000-seed weight
74 CQE13 grain number
75 AQEE020 crushed grain percentage
76 AQFA005 amylose content
77 CQAX31 plant height
78 CQAX27 plant height
79 CQAX28 plant height
80 AQBK012 days to heading
81 CQAA17 relative phosphorus distribution between shoot and root
82 CQAA16 relative phosphorus distribution between shoot and root
83 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India