Rice gene details
Searching for LOC_Os02g53420 [DnaK family protein, putative, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006309 DNA fragmentation involved in apoptotic nuclear change  
2 GO:0006950 response to stress  
3 GO:0006979 response to oxidative stress  
4 GO:0009408 response to heat  
5 GO:0010039 response to iron ion  
6 GO:0010106 cellular response to iron ion starvation  
7 GO:0010918 positive regulation of mitochondrial membrane potential  
8 GO:0043069 negative regulation of programmed cell death  
9 GO:0060623 regulation of chromosome condensation  
10 GO:0090201 negative regulation of release of cytochrome c from mitochondria  
11 GO:2000378 negative regulation of reactive oxygen species metabolic process  
12 GO:0019538 protein metabolic process (RGAP)
13 GO:0009987 cellular process (RGAP)
14 GO:0006950 response to stress (RGAP)
15 GO:0009628 response to abiotic stimulus (RGAP)
16 GO:0008150 biological_process (RGAP)
17 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005773 vacuole (RGAP)
4 GO:0005618 cell wall (RGAP)
5 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007242 iron nutrient regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007415 hydrogen peroxide (+)
7 MCE:1000008 methyl viologen (MV) (+)
8 MCE:1000075 recovery treatment (+)
9 MCE:1000143 iron deficiency treatment (+)
10 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQE012 filled grain number
2 AQQ006 grain yield
3 AQQ002 grain yield
4 AQEX029 total biomass yield
5 AQEX022 root dry weight
6 AQEX016 biomass yield
7 AQCB015 seed set percent
8 AQFE070 100-grain weight
9 AQFE069 100-grain weight
10 CQAB18 plant height
11 CQAB17 plant height
12 CQAB16 plant height
13 CQAB15 plant height
14 AQBC008 plant height
15 AQBC007 plant height
16 AQBC006 plant height
17 AQBB071 plant height
18 AQBB070 plant height
19 AQBB069 plant height
20 AQBB068 plant height
21 AQBB066 plant height
22 AQBB067 plant height
23 AQBB065 plant height
24 AQBB063 plant height
25 AQBB064 plant height
26 AQBB062 plant height
27 AQBB061 plant height
28 AQBB060 plant height
29 AQBB059 plant height
30 AQBB057 plant height
31 AQBB058 plant height
32 AQBB056 plant height
33 AQBB055 plant height
34 AQBB054 plant height
35 AQBB052 plant height
36 AQBB053 plant height
37 AQBB051 plant height
38 AQBB050 plant height
39 AQBB049 plant height
40 AQBB048 plant height
41 AQBB047 plant height
42 AQBB046 plant height
43 AQBB045 plant height
44 AQBB044 plant height
45 AQBB043 plant height
46 AQBB042 plant height
47 AQBB041 plant height
48 AQBB040 plant height
49 AQBB039 plant height
50 AQJ005 panicle number
51 AQO089 root number
52 AQO070 root length
53 CQE14 days to heading
54 AQCK006 days to heading
55 AQFQ002 primary branch
56 AQFQ001 flower number
57 AQDQ014 panicle length
58 AQDQ012 plant height
59 AQDQ013 panicle length
60 AQDQ010 plant height
61 AQDQ011 plant height
62 AQFE114 tiller angle
63 AQED049 grain yield per plant
64 AQED031 grain number
65 AQCR002 grain yield
66 AQFE052 panicle length
67 AQED039 grain number
68 AQEO014 seed width
69 AQDS077 plant height
70 CQN59 spikelet weight
71 AQEB010 1000-seed weight
72 AQEB005 1000-seed weight
73 AQEB001 1000-seed weight
74 CQE13 grain number
75 AQEE020 crushed grain percentage
76 AQFA005 amylose content
77 CQAX31 plant height
78 CQAX27 plant height
79 CQAX28 plant height
80 AQBK012 days to heading
81 CQAA17 relative phosphorus distribution between shoot and root
82 CQAA16 relative phosphorus distribution between shoot and root
83 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000006 plant protoplast (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000078 DNA fragmentation (+)
2 MCT:1000237 dead protoplast percentage (+)
3 MCT:1000240 chromatin condensation (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Sarkar Neelam K; Kundnani Preeti; Grover Anil; Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa). Cell Stress & Chaperones 2012:
PMID [23264228]


Qi Yaocheng; Wang Hongjuan; Zou Yu; Liu Cheng; Liu Yanqi; Wang Ying; Zhang Wei; Over-expression of mitochondrial heat shock protein 70 suppresses programmed cell death in rice. FEBS Letters 2011:585
PMID [21130768]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India