Rice gene details
Searching for LOC_Os02g54760 [cyclic nucleotide-gated ion channel 14, putative, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCV010 grain width
2 AQCW012 chlorophyll content
3 AQGS025 seed weight
4 AQGS017 grain number
5 AQGS011 spikelet number
6 AQGS008 panicle length
7 AQFW023 leaf length
8 AQFR034 seedling vigor
9 AQFR010 seedling vigor
10 AQCU168 spikelet fertility
11 AQFR006 seedling vigor
12 AQCU134 leaf length
13 AQCU092 spikelet number
14 AQE012 filled grain number
15 AQQ006 grain yield
16 AQQ002 grain yield
17 AQEX029 total biomass yield
18 AQEX022 root dry weight
19 AQEX016 biomass yield
20 AQCB015 seed set percent
21 CQAB18 plant height
22 CQAB17 plant height
23 CQAB16 plant height
24 CQAB15 plant height
25 AQBC008 plant height
26 AQBC007 plant height
27 AQBC006 plant height
28 AQBB071 plant height
29 AQBB070 plant height
30 AQBB069 plant height
31 AQBB068 plant height
32 AQBB066 plant height
33 AQBB067 plant height
34 AQBB065 plant height
35 AQBB063 plant height
36 AQBB064 plant height
37 AQBB062 plant height
38 AQBB061 plant height
39 AQBB060 plant height
40 AQBB059 plant height
41 AQBB057 plant height
42 AQBB058 plant height
43 AQBB056 plant height
44 AQBB055 plant height
45 AQBB054 plant height
46 AQBB052 plant height
47 AQBB053 plant height
48 AQBB051 plant height
49 AQBB050 plant height
50 AQBB049 plant height
51 AQBB048 plant height
52 AQBB047 plant height
53 AQBB046 plant height
54 AQBB045 plant height
55 AQBB044 plant height
56 AQBB043 plant height
57 AQBB042 plant height
58 AQBB041 plant height
59 AQBB040 plant height
60 AQBB039 plant height
61 AQO089 root number
62 AQO070 root length
63 CQE14 days to heading
64 AQCK006 days to heading
65 AQDQ014 panicle length
66 AQDQ012 plant height
67 AQDQ013 panicle length
68 AQDQ010 plant height
69 AQDQ011 plant height
70 AQED049 grain yield per plant
71 AQED031 grain number
72 AQCR002 grain yield
73 AQEO014 seed width
74 AQDS077 plant height
75 CQN59 spikelet weight
76 AQEB010 1000-seed weight
77 AQEB005 1000-seed weight
78 AQEB001 1000-seed weight
79 CQE13 grain number
80 AQFA005 amylose content
81 CQAX31 plant height
82 CQAX27 plant height
83 CQAX28 plant height
84 AQBK012 days to heading
85 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India