Rice gene details
Searching for LOC_Os02g55300 [CAF1 family ribonuclease containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g55300.1 296 33 266 PF04857.12 CAF1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004518 nuclease activity (RGAP)
2 GO:0003676 nucleic acid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (-)
2 EO:0007105 abscisic acid regimen (-)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (-)
5 EO:0007404 drought environment (-)
6 MCE:1000280 recovery treatment from heat stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFR024 seedling vigor
2 AQFR016 seedling vigor
3 AQCU121 days to heading
4 AQCU116 days to heading
5 AQCU035 panicle length
6 AQCU023 leaf length
7 AQBT001 bacterial blight disease resistance
8 DQE35 relative growth rate
9 AQEA028 plant height
10 AQEA027 plant height
11 AQEA026 plant height
12 AQEA025 plant height
13 AQEA024 plant height
14 AQEA023 plant height
15 AQEA022 plant height
16 AQBC030 panicle number
17 CQAK8 days to heading
18 AQGS025 seed weight
19 AQGS017 grain number
20 AQGS011 spikelet number
21 AQGS008 panicle length
22 AQFW023 leaf length
23 AQFR034 seedling vigor
24 AQFR010 seedling vigor
25 AQCU168 spikelet fertility
26 AQFR006 seedling vigor
27 AQCU134 leaf length
28 AQCU092 spikelet number
29 AQE012 filled grain number
30 AQQ006 grain yield
31 AQQ002 grain yield
32 AQEX029 total biomass yield
33 AQEX022 root dry weight
34 AQEX016 biomass yield
35 AQCB015 seed set percent
36 CQAB18 plant height
37 CQAB17 plant height
38 CQAB16 plant height
39 CQAB15 plant height
40 AQO089 root number
41 AQO070 root length
42 CQE14 days to heading
43 AQCK006 days to heading
44 AQDQ014 panicle length
45 AQDQ012 plant height
46 AQDQ013 panicle length
47 AQDQ010 plant height
48 AQDQ011 plant height
49 AQED049 grain yield per plant
50 AQED031 grain number
51 AQCR002 grain yield
52 AQEO014 seed width
53 AQDS077 plant height
54 CQN59 spikelet weight
55 AQEB010 1000-seed weight
56 AQEB005 1000-seed weight
57 AQEB001 1000-seed weight
58 AQFA005 amylose content
59 CQAX31 plant height
60 CQAX27 plant height
61 CQAX28 plant height
62 AQBK012 days to heading
63 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chou Wei-Lun; Huang Li-Fen; Fang Jhen-Cheng; Yeh Ching-Hui; Hong Chwan-Yang; Wu Shaw-Jye; Lu Chung-An; Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa. Plant molecular biology 2014:85
PMID [24805883]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India