Rice gene details
Searching for LOC_Os02g56130 [PCNA - Putative DNA replicative polymerase clamp, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g56130.1 264 1 125 PF00705.10 PCNA_N
2 LOC_Os02g56130.1 264 127 254 PF02747.7 PCNA_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding (RGAP)
2 GO:0030234 enzyme regulator activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009411 response to UV  
2 GO:0042542 response to hydrogen peroxide  
3 GO:0043617 cellular response to sucrose starvation  
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0006950 response to stress (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007222 UV light regimen (+)
3 EO:0007237 normal temperature regimen (+)
4 EO:0007415 hydrogen peroxide (+)
5 EO:0007550 methyl methanesulfonate (+)
6 MCE:1000037 sucrose (+)
7 MCE:1000080 sucrose starvation (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN6 nadh-dependent glutamate synthase content
2 CQAO17 spikelet density
3 CQAE7 plant height
4 CQAE16 grain number
5 AQBC009 plant height
6 AQFR024 seedling vigor
7 AQFR016 seedling vigor
8 AQCU121 days to heading
9 AQCU116 days to heading
10 AQCU035 panicle length
11 AQCU023 leaf length
12 AQBT001 bacterial blight disease resistance
13 AQGS025 seed weight
14 AQGS017 grain number
15 AQGS011 spikelet number
16 AQGS008 panicle length
17 AQE012 filled grain number
18 AQQ006 grain yield
19 AQQ002 grain yield
20 AQEX029 total biomass yield
21 AQEX022 root dry weight
22 AQEX016 biomass yield
23 AQCB015 seed set percent
24 AQED049 grain yield per plant
25 AQED031 grain number
26 AQCR002 grain yield
27 CQN59 spikelet weight
28 AQEB010 1000-seed weight
29 AQEB005 1000-seed weight
30 AQEB001 1000-seed weight
31 AQFA005 amylose content
32 CQAX27 plant height
33 AQBK012 days to heading
34 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 BAB70509 - 158-447 LOC_Os02g56130 - --- Protein-protein interaction analysis : Pull Down Assay
2 LOC_Os02g56130 - --- BAB70509 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
3 LOC_Os02g56130 - --- BAB70509 - --- Protein-protein interaction analysis : Pull Down Assay
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamamoto Taichi; Mori Yoko; Ishibashi Toyotaka; Uchiyama Yukinobu; Ueda Tadamasa; Ando Tsuyu; Hashimoto Junji; Kimura Seisuke; Sakaguchi Kengo; Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage. Journal of plant research 2005:118
PMID [15806324]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India