Rice gene details
Searching for LOC_Os02g56400 [OsWAK22 - OsWAK receptor-like protein kinase ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g56400.1 747 294 335 PF07645.7 EGF_CA
2 LOC_Os02g56400.1 747 422 567 PF07714.9 Pkinase_Tyr
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  6
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0016043 cellular component organization (RGAP)
3 GO:0009653 anatomical structure morphogenesis (RGAP)
4 GO:0016049 cell growth (RGAP)
5 GO:0019725 cellular homeostasis (RGAP)
6 GO:0006464 protein modification process (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0005975 carbohydrate metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN6 nadh-dependent glutamate synthase content
2 CQAO17 spikelet density
3 CQAE7 plant height
4 CQAE16 grain number
5 AQBC009 plant height
6 AQFR024 seedling vigor
7 AQFR016 seedling vigor
8 AQCU121 days to heading
9 AQCU116 days to heading
10 AQCU035 panicle length
11 AQCU023 leaf length
12 AQBT001 bacterial blight disease resistance
13 AQGS025 seed weight
14 AQGS017 grain number
15 AQGS011 spikelet number
16 AQGS008 panicle length
17 AQE012 filled grain number
18 AQQ006 grain yield
19 AQQ002 grain yield
20 AQEX029 total biomass yield
21 AQEX022 root dry weight
22 AQEX016 biomass yield
23 AQCB015 seed set percent
24 AQED049 grain yield per plant
25 AQED031 grain number
26 AQCR002 grain yield
27 CQN59 spikelet weight
28 AQEB010 1000-seed weight
29 AQEB005 1000-seed weight
30 AQEB001 1000-seed weight
31 AQFA005 amylose content
32 CQAX27 plant height
33 AQBK012 days to heading
34 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India