Rice gene details
Searching for LOC_Os02g56700 [dehydrogenase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g56700.1 340 22 141 PF01370.13 Epimerase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0019748 secondary metabolic process (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-581 IAA biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQA029 root number
2 AQHR033 plant height
3 AQHR032 plant height
4 AQHR008 tiller number
5 AQGM030 grain yield
6 AQGM020 spikelet fertility
7 AQAF028 blast disease resistance
8 AQAF027 blast disease resistance
9 AQAF026 blast disease resistance
10 AQAF025 blast disease resistance
11 AQAF024 blast disease resistance
12 AQAF023 blast disease resistance
13 AQAF022 blast disease resistance
14 AQAF021 blast disease resistance
15 AQAF020 blast disease resistance
16 AQAF019 blast disease resistance
17 AQAF018 blast disease resistance
18 CQAS25 seed number
19 CQAS24 spikelet number
20 CQAS23 1000-seed weight
21 CQAS21 seed number
22 CQAS19 spikelet number
23 CQAS17 panicle length
24 CQN6 nadh-dependent glutamate synthase content
25 CQAO17 spikelet density
26 CQAE7 plant height
27 CQAE16 grain number
28 AQBC009 plant height
29 AQFR024 seedling vigor
30 AQFR016 seedling vigor
31 AQCU121 days to heading
32 AQCU116 days to heading
33 AQCU035 panicle length
34 AQCU023 leaf length
35 AQBT001 bacterial blight disease resistance
36 AQGS025 seed weight
37 AQGS017 grain number
38 AQGS011 spikelet number
39 AQGS008 panicle length
40 AQE012 filled grain number
41 AQED049 grain yield per plant
42 AQED031 grain number
43 AQCR002 grain yield
44 CQN59 spikelet weight
45 AQEB010 1000-seed weight
46 AQEB005 1000-seed weight
47 AQEB001 1000-seed weight
48 CQAX27 plant height
49 AQBK012 days to heading
50 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


2  Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


3  Yang Xi; Yang Ya-Nan; Xue Liang-Jiao; Zou Mei-Juan; Liu Jian-Jing; Chen Fan; Xue Hong-Wei; Rice ABI5-like1 Regulates ABA and Auxin Responses by Affecting the Expression of ABRE-Containing Genes. Plant Physiology 2011:
PMID [21546455]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India