Rice gene details
Searching for LOC_Os02g58220 [RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g58220.1 280 71 145 PF01336.17 tRNA_anti
2 LOC_Os02g58220.1 280 162 271 PF08784.3 RPA_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -11
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -6

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 DQF5 root penetration index
2 CQV7 plant height
3 CQJ4 panicle number
4 AQBE053 tiller number
5 CQAI32 root number
6 AQBE018 tiller number
7 AQBC077 leaf length
8 AQBC078 leaf length
9 AQA029 root number
10 CQAO17 spikelet density
11 AQFR024 seedling vigor
12 AQFR016 seedling vigor
13 AQCU121 days to heading
14 AQCU116 days to heading
15 AQCU035 panicle length
16 AQCU023 leaf length
17 AQBT001 bacterial blight disease resistance
18 CQAX27 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India