Rice gene details
Searching for LOC_Os03g01740 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os03g01740.1 107 10 21 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  7
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
Biological process
Not found
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007173 warm/hot temperature regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000097 propionic acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE2 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os03g01740 - --- LOC_Os03g02680 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 LOC_Os03g01740 - --- LOC_Os03g10650 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
3 LOC_Os03g01740 - --- LOC_Os09g29100 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
4 LOC_Os03g01740 - --- LOC_Os03g02680 - --- Protein-protein interaction analysis : Fluorescence Resonance Energy Transfer (FRET) assay
5 LOC_Os03g01740 - --- LOC_Os03g10650 - --- Protein-protein interaction analysis : Fluorescence Resonance Energy Transfer (FRET) assay
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Peres Adrian; Churchman Michelle L; Hariharan Srivaidehirani; Himanen Kristiina; Verkest Aurine; Vandepoele Klaas; Magyar Zoltan; Hatzfeld Yves; Van Der Schueren Els; Beemster Gerrit T S; Frankard Valerie; Larkin John C; Inzé Dirk; De Veylder Lieven; Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses. The Journal of biological chemistry 2007:282
PMID [17599908]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India