Rice gene details
Searching for LOC_Os03g02010 [DNA methyltransferase protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g02010.1 627 503 620 PF00145.9 DNA_methylase
2 LOC_Os03g02010.2 599 475 592 PF00145.9 DNA_methylase
3 LOC_Os03g02010.3 598 474 591 PF00145.9 DNA_methylase
4 LOC_Os03g02010.4 508 384 501 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
3 GO:0008152 metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0016043 cellular component organization (RGAP)
6 GO:0006464 protein modification process (RGAP)
7 GO:0040029 regulation of gene expression, epigenetic (RGAP)
8 GO:0006259 DNA metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-4021 β-alanine betaine biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAR8 spikelet density
2 CQAR7 tiller number
3 AQDQ027 panicle length
4 AQDQ026 plant height
5 AQDQ025 plant height
6 AQDQ024 plant height
7 AQCN005 days to heading
8 CQAX17 plant height
9 CQAX32 plant height
10 AQEN003 blast disease resistance
11 AQFF025 days to flower
12 AQFF026 days to flower
13 AQFF024 days to flower
14 AQFF022 days to flower
15 AQFF023 days to flower
16 AQFF021 harvest index
17 AQFF019 harvest index
18 AQFF018 harvest index
19 AQFF017 harvest index
20 AQFF016 harvest index
21 DQF6 root penetration index
22 DQF10 penetrated root thickness
23 DQE48 relative water content
24 DQE36 relative growth rate
25 CQAX4 plant height
26 CQAI46 root dry weight
27 CQAI38 root volume
28 AQEN012 blast disease resistance
29 AQEA200 days to heading
30 AQEA201 days to heading
31 AQEA199 days to heading
32 AQEA198 days to heading
33 AQEA197 days to heading
34 AQEA196 days to heading
35 AQEA195 days to heading
36 AQEA194 days to heading
37 AQEA193 days to heading
38 AQEA192 days to heading
39 AQEA191 days to heading
40 AQEA190 days to heading
41 AQDV009 days to heading
42 AQEA189 days to heading
43 AQDR011 grain number
44 AQDR003 1000-seed weight
45 AQDQ023 spikelet number
46 AQBV008 leaf angle
47 AQBE054 tiller number
48 AQAS007 days to maturity
49 AQAS001 days to flower
50 AQCU210 leaf length
51 AQCU202 plant height
52 AQCU012 plant height
53 CQAE2 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India