Rice gene details
Searching for LOC_Os03g03370 [fatty acid hydroxylase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g03370.1 286 122 241 PF04116.5 FA_hydroxylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  1
N22 Root FC
  -4
IR64 Flag-leaf FC
  8
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009414 response to water deprivation  
3 GO:0009416 response to light stimulus  
4 GO:0009628 response to abiotic stimulus  
5 GO:0009633 drought tolerance  
6 GO:0009651 response to salt stress  
7 GO:0009688 abscisic acid biosynthetic process  
8 GO:0009737 response to abscisic acid stimulus  
9 GO:0009058 biosynthetic process (RGAP)
10 GO:0009987 cellular process (RGAP)
11 GO:0006629 lipid metabolic process (RGAP)
12 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0005783 endoplasmic reticulum (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007162 continuous light regimen (+)
4 EO:0007173 warm/hot temperature regimen (+)
5 EO:0007196 light regimen (+)
6 EO:0007222 UV light regimen (+)
7 EO:0007270 continuous dark (no light) regimen (+)
8 EO:0007332 cold air temperature regimen (+)
9 EO:0007404 drought environment (+)
10 MCE:1000075 recovery treatment (+)
11 MCE:1000091 methyl viologen/paraquat (+)
12 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS38 seed number
2 CQAS37 spikelet number
3 CQAS34 seed number
4 CQAS36 1000-seed weight
5 CQAS33 spikelet density
6 CQAS32 spikelet number
7 AQGP002 days to heading
8 AQEI130 leaf senescence
9 AQEI108 leaf senescence
10 AQEI006 leaf senescence
11 AQEI005 leaf senescence
12 AQFC001 elongation ability
13 CQE15 chlorophyll content
14 AQBI004 pollen fertility
15 AQFW219 leaf width
16 AQFW157 leaf width
17 AQFW095 leaf width
18 AQFW055 days to heading
19 AQFW039 days to heading
20 AQFW020 plant height
21 AQFW031 plant height
22 AQFW002 days to heading
23 AQFW007 plant height
24 AQCU104 spikelet fertility
25 AQCU003 days to heading
26 AQCU002 days to heading
27 AQCU001 days to heading
28 AQBT004 bacterial blight disease resistance
29 AQBT003 bacterial blight disease resistance
30 AQBT002 bacterial blight disease resistance
31 AQEK001 iron sensitivity
32 CQAR8 spikelet density
33 CQAR7 tiller number
34 AQDQ027 panicle length
35 AQDQ026 plant height
36 AQDQ025 plant height
37 AQDQ024 plant height
38 AQCN005 days to heading
39 CQAX17 plant height
40 CQAX32 plant height
41 AQEN003 blast disease resistance
42 AQFF025 days to flower
43 AQFF026 days to flower
44 AQFF024 days to flower
45 AQFF022 days to flower
46 AQFF023 days to flower
47 AQFF021 harvest index
48 AQFF019 harvest index
49 AQFF018 harvest index
50 AQFF017 harvest index
51 AQFF016 harvest index
52 DQF6 root penetration index
53 DQF10 penetrated root thickness
54 DQE48 relative water content
55 DQE36 relative growth rate
56 CQAX4 plant height
57 CQAI46 root dry weight
58 CQAI38 root volume
59 AQEN012 blast disease resistance
60 AQEA200 days to heading
61 AQEA201 days to heading
62 AQEA199 days to heading
63 AQEA198 days to heading
64 AQEA197 days to heading
65 AQEA196 days to heading
66 AQEA195 days to heading
67 AQEA194 days to heading
68 AQEA193 days to heading
69 AQEA192 days to heading
70 AQEA191 days to heading
71 AQEA190 days to heading
72 AQDV009 days to heading
73 AQEA189 days to heading
74 AQDR011 grain number
75 AQDR003 1000-seed weight
76 AQDQ023 spikelet number
77 AQBV008 leaf angle
78 AQBE054 tiller number
79 AQAS007 days to maturity
80 AQAS001 days to flower
81 CQAE2 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001083 inflorescence development stages (+)
3 PO:0004506 developing seed stage (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007050 FR.03 late stage of fruit ripening (+)
6 PO:0007098 LP.02 two leaves visible (+)
7 PO:0007106 LP.03 three leaves visible (+)
8 PO:0007115 LP.04 four leaves visible (+)
9 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005004 shoot node (+)
3 PO:0006000 Poaceae hull (+)
4 PO:0006321 second order inflorescence axis (+)
5 PO:0008037 seedling (+)
6 PO:0009000 pulvinus (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009010 seed (+)
10 PO:0009025 vascular leaf (+)
11 PO:0009047 stem (+)
12 PO:0009066 anther (+)
13 PO:0020103 flag leaf (+)
14 PO:0020104 leaf sheath (+)
15 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000239 calli induction stage (+)
2 MCP:1000240 calli screening stage (+)
3 MCP:1000241 calli differentiation stage (+)

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000008 shoot biomass (+)
2 MCT:1000012 survival rate (+)
3 MCT:1000034 superoxide dismutase (SOD) activity (+)
4 MCT:1000037 malondialdehyde (MDA) content (+)
5 MCT:1000039 water loss (+)
6 MCT:1000112 oxidative damage (+)
7 MCT:1000218 hydrogen peroxide accumulation (+)
8 MCT:1000433 percentage of open stomata (+)
9 TO:0000136 relative water content (+)
10 TO:0000180 spikelet fertility (+)
11 TO:0000227 root length (+)
12 TO:0000233 root volume (+)
13 TO:0000301 xanthophyll content (+)
14 TO:0000455 seed set percent (+)
15 TO:0000495 chlorophyll content (+)
16 TO:0000652 leaf necrosis (+)
17 TO:0002667 abscisic acid content (+)
18 TO:0002695 beta-carotene content (+)
19 TO:0002696 alpha carotene content (+)
20 TO:0002699 lycopene content (+)
21 TO:0002701 lutein content (+)
22 TO:0020117 non photochemical quenching (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Du Hao; Liu Linhong; You Lei; Yang Mei; He Yubing; Li Xianghua; Xiong Lizhong; Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Molecular Biology 2011:
PMID [22038091]


Chaudhary Neetu; Nijhawan Aashima; Khurana Jitendra P; Khurana Paramjit; Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Molecular Genetics and Genomics 2010:283
PMID [19890663]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India