Rice gene details
Searching for LOC_Os03g07100 [LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g07100.1 188 28 106 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0008289 lipid binding (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDL002 stomatal resistance
2 AQFW081 plant height
3 AQFU015 amylose content
4 AQGA007 amylose content
5 CQP3 days to heading
6 CQAS38 seed number
7 CQAS37 spikelet number
8 CQAS34 seed number
9 CQAS36 1000-seed weight
10 CQAS33 spikelet density
11 CQAS32 spikelet number
12 AQEI130 leaf senescence
13 AQEI108 leaf senescence
14 AQFC001 elongation ability
15 CQE15 chlorophyll content
16 CQAR8 spikelet density
17 CQAR7 tiller number
18 AQDQ027 panicle length
19 AQDQ026 plant height
20 AQDQ025 plant height
21 AQDQ024 plant height
22 AQCN005 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000173 inflorescence 5-10cm stage (+)
2 MCP:1000176 inflorescence 22-30cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009047 stem (+)
3 PO:0009049 inflorescence (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India