Rice gene details
Searching for LOC_Os03g08170 [protein kinase APK1B, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g08170.1 426 92 369 PF07714.9 Pkinase_Tyr
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -14
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0001071 nucleic acid binding transcription factor activity  
2 GO:0004672 protein kinase activity  
3 GO:0004713 protein tyrosine kinase activity  
4 GO:0016301 kinase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006468 protein phosphorylation  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009628 response to abiotic stimulus  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0046777 protein autophosphorylation  
8 GO:0008152 metabolic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX11 panicle length
2 AQDL002 stomatal resistance
3 AQFW081 plant height
4 AQFU015 amylose content
5 CQP3 days to heading
6 CQAS38 seed number
7 CQAS37 spikelet number
8 CQAS34 seed number
9 CQAS36 1000-seed weight
10 CQAS33 spikelet density
11 CQAS32 spikelet number
12 AQFC001 elongation ability
13 CQE15 chlorophyll content
14 CQAR8 spikelet density
15 CQAR7 tiller number
16 AQDQ027 panicle length
17 AQDQ026 plant height
18 AQDQ025 plant height
19 AQDQ024 plant height
20 AQCN005 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0007130 B reproductive growth (+)
5 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000406 second leaf from top (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009049 inflorescence (+)
7 PO:0020103 flag leaf (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000015 photochemical efficiency (+)
3 MCT:1000504 seedling fresh weight (+)
4 TO:0000019 seedling height (+)
5 TO:0000085 leaf rolling (+)
6 TO:0000136 relative water content (+)
7 TO:0000152 panicle number (+)
8 TO:0000227 root length (+)
9 TO:0000396 grain yield (+)
10 TO:0000436 spikelet sterility (+)
11 TO:0000446 leaf drying (+)
12 TO:0001014 leaf dry weight (+)
13 TO:0001015 photosynthetic rate (+)
14 TO:0001017 water use efficiency (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os03g08170 - --- LOC_Os01g58420 - --- Protein-protein interaction analysis : Pull Down Assay
2 LOC_Os03g08170 - --- LOC_Os01g58420 - --- In vitro kinase assay
3 LOC_Os03g08170 - --- LOC_Os01g58420 - --- In vitro Phosphorylation Assay
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]


Vij Shubha; Giri Jitender; Dansana Prasant Kumar; Kapoor Sanjay; Tyagi Akhilesh K; The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress. Molecular Plant 2008:1
PMID [19825577]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India