Rice gene details
Searching for LOC_Os03g08570 [amine oxidase, flavin-containing, domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g08570.1 579 114 556 PF01593.16 Amino_oxidase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009416 response to light stimulus  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0006629 lipid metabolic process (RGAP)
8 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)
2 EO:0007196 light regimen (+)
3 EO:0007270 continuous dark (no light) regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000008 methyl viologen (MV) (+)
7 MCE:1000287 recovery treatment from cold stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX11 panicle length
2 AQDL002 stomatal resistance
3 AQFW081 plant height
4 AQFU015 amylose content
5 CQP3 days to heading
6 CQAS38 seed number
7 CQAS37 spikelet number
8 CQAS34 seed number
9 CQAS36 1000-seed weight
10 CQAS33 spikelet density
11 CQAS32 spikelet number
12 AQFC001 elongation ability
13 CQE15 chlorophyll content
14 CQAR8 spikelet density
15 CQAR7 tiller number
16 AQDQ027 panicle length
17 AQDQ026 plant height
18 AQDQ025 plant height
19 AQDQ024 plant height
20 AQCN005 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0004506 developing seed stage (+)
5 PO:0007050 FR.03 late stage of fruit ripening (+)
6 PO:0007065 LP.05 five leaves visible (+)
7 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000100 upper leaf (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009049 inflorescence (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000037 malondialdehyde (MDA) content (+)
3 MCT:1000218 hydrogen peroxide accumulation (+)
4 MCT:1000433 percentage of open stomata (+)
5 MCT:1000434 trans-violaxanthin content (+)
6 MCT:1000435 cis-violaxanthin content (+)
7 MCT:1000436 trans-beta-carotene content (+)
8 MCT:1000437 cis beta-carotene content (+)
9 MCT:1000567 seedling whitening (+)
10 MCT:1000570 membrane permeability (+)
11 TO:0000085 leaf rolling (+)
12 TO:0000207 plant height (+)
13 TO:0000272 plant survivability (+)
14 TO:0000478 abscisic acid concentration (+)
15 TO:0000495 chlorophyll content (+)
16 TO:0000619 vivipary (+)
17 TO:0001016 relative chlorophyll content (+)
18 TO:0002667 abscisic acid content (+)
19 TO:0002696 alpha carotene content (+)
20 TO:0002701 lutein content (+)
21 TO:0002715 chloroplast development trait (+)
22 TO:0020106 Indole-3-acetic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


2  Chaudhary Neetu; Nijhawan Aashima; Khurana Jitendra P; Khurana Paramjit; Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Molecular Genetics and Genomics 2010:283
PMID [19890663]


3  Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


4  Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India