Rice gene details
Searching for LOC_Os03g08900 [MATE efflux family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g08900.1 490 53 213 PF01554.10 MatE
2 LOC_Os03g08900.1 490 279 435 PF01554.10 MatE
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  17
N22 Root FC
  -5
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0046685 response to arsenic-containing substance  
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009835 ripening (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX11 panicle length
2 AQDL002 stomatal resistance
3 AQFW081 plant height
4 AQFU015 amylose content
5 CQAS38 seed number
6 CQAS37 spikelet number
7 CQAS34 seed number
8 CQAS36 1000-seed weight
9 CQAS33 spikelet density
10 CQAS32 spikelet number
11 AQFC001 elongation ability
12 CQE15 chlorophyll content
13 CQAR8 spikelet density
14 CQAR7 tiller number
15 AQDQ027 panicle length
16 AQDQ026 plant height
17 AQDQ025 plant height
18 AQDQ024 plant height
19 AQCN005 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India