Rice gene details
Searching for LOC_Os03g11960 [copper/zinc superoxide dismutase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g11960.1 165 8 162 PF00080.12 Sod_Cu
2 LOC_Os03g11960.2 163 8 137 PF00080.12 Sod_Cu
3 LOC_Os03g11960.3 133 8 130 PF00080.12 Sod_Cu
4 LOC_Os03g11960.4 117 8 116 PF00080.12 Sod_Cu
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
3 GO:0008152 metabolic process (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005777 peroxisome (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005576 extracellular region (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDQ028 panicle length
2 AQDQ029 panicle length
3 AQAC032 total amylase activity
4 AQAG009 tiller number
5 AQEX008 root length
6 AQGI001 root dry weight
7 AQGI011 root dry weight
8 AQGI110 biomass yield
9 AQGI111 biomass yield
10 AQAL004 deep root dry weight
11 AQAL010 deep root to shoot ratio
12 AQGC006 penetrated root number
13 AQGC012 penetrated root number
14 AQGC015 root penetration index
15 AQDL005 stomatal closure time
16 AQCO005 spikelet fertility
17 AQCO115 spikelet fertility
18 AQCO118 spikelet fertility
19 AQCP005 spikelet fertility
20 AQGC021 root penetration index
21 AQBA010 brown planthopper resistance
22 AQBA011 brown planthopper resistance
23 AQBA014 brown planthopper resistance
24 AQW007 brown planthopper resistance
25 AQDI004 hybrid incompatibilty
26 AQDK007 grain yield
27 AQCU106 spikelet fertility
28 AQEE021 crushed grain percentage
29 CQX11 panicle length
30 AQDL002 stomatal resistance
31 AQFU015 amylose content
32 CQAS38 seed number
33 CQAS37 spikelet number
34 CQAS34 seed number
35 CQAS36 1000-seed weight
36 CQAS33 spikelet density
37 CQAS32 spikelet number
38 AQFC001 elongation ability
39 CQE15 chlorophyll content
40 CQAR8 spikelet density
41 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India