Rice gene details
Searching for LOC_Os03g12030 [3-ketoacyl-CoA synthase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g12030.1 495 79 367 PF08392.4 FAE1_CUT1_RppA
2 LOC_Os03g12030.1 495 385 465 PF08541.2 ACP_syn_III_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  5
N22InfloresenceFC
  -1
N22 Root FC
  -50
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009651 response to salt stress  
3 GO:0016043 cellular component organization (RGAP)
4 GO:0009653 anatomical structure morphogenesis (RGAP)
5 GO:0016049 cell growth (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0006629 lipid metabolic process (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
9 GO:0008152 metabolic process (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0009058 biosynthetic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005783 endoplasmic reticulum (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 MCE:1000195 hypoxic environment (+)
4 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FASYN-ELONG-PWY fatty acid elongation -- saturated
2 PWY-282 epicuticular wax biosynthesis
3 PWY-4041 γ-glutamyl cycle

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDQ028 panicle length
2 AQDQ029 panicle length
3 AQAC032 total amylase activity
4 AQAG009 tiller number
5 AQEX008 root length
6 AQGI001 root dry weight
7 AQGI011 root dry weight
8 AQGI110 biomass yield
9 AQGI111 biomass yield
10 AQAL004 deep root dry weight
11 AQAL010 deep root to shoot ratio
12 AQGC006 penetrated root number
13 AQGC012 penetrated root number
14 AQGC015 root penetration index
15 AQDL005 stomatal closure time
16 AQCO005 spikelet fertility
17 AQCO115 spikelet fertility
18 AQCO118 spikelet fertility
19 AQCP005 spikelet fertility
20 AQGC021 root penetration index
21 AQBA010 brown planthopper resistance
22 AQBA011 brown planthopper resistance
23 AQBA014 brown planthopper resistance
24 AQW007 brown planthopper resistance
25 AQDI004 hybrid incompatibilty
26 AQDK007 grain yield
27 AQCU106 spikelet fertility
28 AQEE021 crushed grain percentage
29 CQX11 panicle length
30 AQDL002 stomatal resistance
31 AQFU015 amylose content
32 CQAS38 seed number
33 CQAS37 spikelet number
34 CQAS34 seed number
35 CQAS36 1000-seed weight
36 CQAS33 spikelet density
37 CQAS32 spikelet number
38 AQFC001 elongation ability
39 CQE15 chlorophyll content
40 CQAR8 spikelet density
41 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000159 root base (+)
2 MCP:1000160 middle part of root (+)
3 MCP:1000559 long adventitious root (+)
4 MCP:1000560 short adventitious root (+)
5 PO:0000025 root tip (+)
6 PO:0005427 sclerenchyma (+)
7 PO:0005772 exodermis (+)
8 PO:0008037 seedling (+)
9 PO:0009005 root (+)
10 PO:0009025 vascular leaf (+)
11 PO:0009047 stem (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Wang Youhua; Wan Liyun; Zhang Lixia; Zhang Zhijin; Zhang Haiwen; Quan Ruidang; Zhou Shirong; Huang Rongfeng; An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice. Plant Molecular Biology 2011:
PMID [22130861]


Krishnamurthy Pannaga; Ranathunge Kosala; Franke Rochus; Prakash H S; Schreiber Lukas; Mathew M K; The role of root apoplastic transport barriers in salt tolerance of rice (Oryza sativa L.). Planta 2009:230
PMID [19363620]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India