Rice gene details
Searching for LOC_Os03g12370 [HSF-type DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g12370.1 411 49 225 PF00447.9 HSF_DNA-bind
2 LOC_Os03g12370.2 407 49 225 PF00447.9 HSF_DNA-bind
3 LOC_Os03g12370.3 407 49 225 PF00447.9 HSF_DNA-bind
4 LOC_Os03g12370.4 285 2 99 PF00447.9 HSF_DNA-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0042542 response to hydrogen peroxide  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007173 warm/hot temperature regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007338 cold water temperature regimen (+)
5 EO:0007368 warm/hot water temperature regimen (+)
6 EO:0007415 hydrogen peroxide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDQ028 panicle length
2 AQDQ029 panicle length
3 AQAC032 total amylase activity
4 AQAG009 tiller number
5 AQEX008 root length
6 AQGI001 root dry weight
7 AQGI011 root dry weight
8 AQGI110 biomass yield
9 AQGI111 biomass yield
10 AQAL004 deep root dry weight
11 AQAL010 deep root to shoot ratio
12 AQGC006 penetrated root number
13 AQGC012 penetrated root number
14 AQGC015 root penetration index
15 AQDL005 stomatal closure time
16 AQCO005 spikelet fertility
17 AQCO115 spikelet fertility
18 AQCO118 spikelet fertility
19 AQCP005 spikelet fertility
20 AQGC021 root penetration index
21 AQBA010 brown planthopper resistance
22 AQBA011 brown planthopper resistance
23 AQBA014 brown planthopper resistance
24 AQW007 brown planthopper resistance
25 AQDI004 hybrid incompatibilty
26 AQDK007 grain yield
27 AQCU106 spikelet fertility
28 AQEE021 crushed grain percentage
29 CQX11 panicle length
30 AQDL002 stomatal resistance
31 AQFU015 amylose content
32 CQAS38 seed number
33 CQAS37 spikelet number
34 CQAS34 seed number
35 CQAS36 1000-seed weight
36 CQAS33 spikelet density
37 CQAS32 spikelet number
38 AQFC001 elongation ability
39 CQE15 chlorophyll content
40 CQAR8 spikelet density
41 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000006 plant protoplast (+)
3 PO:0005052 plant callus (+)
4 PO:0006340 adult leaf (-)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009010 seed (-)
9 PO:0009046 flower (+)
10 PO:0009047 stem (+)
11 PO:0009049 inflorescence (+)
12 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wen Feng; Qin Tingting; Wang Yao; Dong Wen; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice. Journal of integrative plant biology 2014:
PMID [24912543]


Mittal Dheeraj; Madhyastha Dinesh A; Grover Anil; Gene expression analysis in response to low and high temperature and oxidative stresses in rice: Combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Science 2012:197
PMID [23116677]


Mittal Dheeraj; Chakrabarti Sveta; Sarkar Anshuk; Singh Amanjot; Grover Anil; Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiology and Biochemistry 2009:47
PMID [19539489]


Wang Chuang; Zhang Qian; Shou Hui-xia; Identification and expression analysis of OsHsfs in rice. Journal of Zhejiang University. Science. B 2009:10
PMID [19353748]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India