Rice gene details
Searching for LOC_Os03g12570 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g12570.1 1788 312 436 PF01426.10 BAH
2 LOC_Os03g12570.1 1788 584 640 PF00385.16 Chromo
3 LOC_Os03g12570.1 1788 649 706 PF00145.9 DNA_methylase
4 LOC_Os03g12570.1 1788 957 1012 PF00145.9 DNA_methylase
5 LOC_Os03g12570.1 1788 1399 1715 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  3
N22 Root FC
  -8
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
3 GO:0040029 regulation of gene expression, epigenetic (RGAP)
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
7 GO:0016043 cellular component organization (RGAP)
8 GO:0006464 protein modification process (RGAP)
9 GO:0000003 reproduction (RGAP)
10 GO:0009791 post-embryonic development (RGAP)
11 GO:0009790 embryo development (RGAP)
12 GO:0007049 cell cycle (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDQ028 panicle length
2 AQDQ029 panicle length
3 AQAC032 total amylase activity
4 AQAG009 tiller number
5 AQEX008 root length
6 AQGI001 root dry weight
7 AQGI011 root dry weight
8 AQGI110 biomass yield
9 AQGI111 biomass yield
10 AQAL004 deep root dry weight
11 AQAL010 deep root to shoot ratio
12 AQGC006 penetrated root number
13 AQGC012 penetrated root number
14 AQGC015 root penetration index
15 AQDL005 stomatal closure time
16 AQCO005 spikelet fertility
17 AQCO115 spikelet fertility
18 AQCO118 spikelet fertility
19 AQCP005 spikelet fertility
20 AQGC021 root penetration index
21 AQBA010 brown planthopper resistance
22 AQBA011 brown planthopper resistance
23 AQBA014 brown planthopper resistance
24 AQW007 brown planthopper resistance
25 AQDI004 hybrid incompatibilty
26 AQDK007 grain yield
27 AQCU106 spikelet fertility
28 AQEE021 crushed grain percentage
29 CQX11 panicle length
30 AQDL002 stomatal resistance
31 AQFU015 amylose content
32 CQAS38 seed number
33 CQAS37 spikelet number
34 CQAS34 seed number
35 CQAS36 1000-seed weight
36 CQAS33 spikelet density
37 CQAS32 spikelet number
38 AQFC001 elongation ability
39 CQE15 chlorophyll content
40 CQAR8 spikelet density
41 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India