Rice gene details
Searching for LOC_Os03g13300 [glutamate decarboxylase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g13300.1 493 33 381 PF00282.11 Pyridoxal_deC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  -2
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  55
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLUDEG-I-PWY glutamate degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEI052 leaf senescence
2 AQEI065 leaf senescence
3 AQEI131 leaf senescence
4 AQFJ061 grain yield per plant
5 AQCK007 days to heading
6 CQE16 days to heading
7 AQCI008 phosphorus sensitivity
8 AQCV024 chalkiness of endosperm
9 AQDQ028 panicle length
10 AQDQ029 panicle length
11 AQAC032 total amylase activity
12 AQAG009 tiller number
13 AQEX008 root length
14 AQGI001 root dry weight
15 AQGI011 root dry weight
16 AQGI110 biomass yield
17 AQGI111 biomass yield
18 AQAL004 deep root dry weight
19 AQAL010 deep root to shoot ratio
20 AQGC006 penetrated root number
21 AQGC012 penetrated root number
22 AQGC015 root penetration index
23 AQDL005 stomatal closure time
24 AQCO005 spikelet fertility
25 AQCO115 spikelet fertility
26 AQCO118 spikelet fertility
27 AQCP005 spikelet fertility
28 AQGC021 root penetration index
29 AQBA010 brown planthopper resistance
30 AQBA011 brown planthopper resistance
31 AQBA014 brown planthopper resistance
32 AQW007 brown planthopper resistance
33 AQDI004 hybrid incompatibilty
34 AQDK007 grain yield
35 AQCU106 spikelet fertility
36 AQEE021 crushed grain percentage
37 CQX11 panicle length
38 AQDL002 stomatal resistance
39 AQFU015 amylose content
40 CQAS38 seed number
41 CQAS37 spikelet number
42 CQAS34 seed number
43 CQAS36 1000-seed weight
44 CQAS33 spikelet density
45 CQAS32 spikelet number
46 AQFC001 elongation ability
47 CQAR8 spikelet density
48 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009025 vascular leaf (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os05g48010 - --- LOC_Os03g13300 - 554 - - Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

El-Kereamy Ashraf; Bi Yong-Mei; Ranathunge Kosala; Beatty Perrin H; Good Allen G; Rothstein Steven J; The Rice R2R3-MYB Transcription Factor OsMYB55 Is Involved in the Tolerance to High Temperature and Modulates Amino Acid Metabolism. PloS one 2012:7
PMID [23251677]


Su Chin-Fen; Wang Yi-Chieh; Hsieh Tsai-Hung; Lu Chung-An; Tseng Tung-Hai; Yu Su-May; A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiology 2010:153
PMID [20130099]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India