Rice gene details
Searching for LOC_Os03g14310 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g14310.1 447 226 354 PF07762.6 DUF1618
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000280 recovery treatment from heat stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAW8 root number
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content
5 AQEA202 days to heading
6 AQEA203 days to heading
7 AQEA204 days to heading
8 AQEA205 days to heading
9 AQEA206 days to heading
10 AQEA207 days to heading
11 AQEA208 days to heading
12 AQEI052 leaf senescence
13 AQEI065 leaf senescence
14 AQEI131 leaf senescence
15 AQFJ061 grain yield per plant
16 AQCK007 days to heading
17 CQE16 days to heading
18 AQCI008 phosphorus sensitivity
19 AQCV024 chalkiness of endosperm
20 AQDQ028 panicle length
21 AQDQ029 panicle length
22 AQAC032 total amylase activity
23 AQAG009 tiller number
24 AQEX008 root length
25 AQGI001 root dry weight
26 AQGI011 root dry weight
27 AQGI110 biomass yield
28 AQGI111 biomass yield
29 AQAL004 deep root dry weight
30 AQAL010 deep root to shoot ratio
31 AQGC006 penetrated root number
32 AQGC012 penetrated root number
33 AQGC015 root penetration index
34 AQDL005 stomatal closure time
35 AQCO005 spikelet fertility
36 AQCO115 spikelet fertility
37 AQCO118 spikelet fertility
38 AQCP005 spikelet fertility
39 AQGC021 root penetration index
40 AQDI004 hybrid incompatibilty
41 AQDK007 grain yield
42 AQCU106 spikelet fertility
43 AQEE021 crushed grain percentage
44 CQX11 panicle length
45 AQDL002 stomatal resistance
46 AQFU015 amylose content
47 CQAS38 seed number
48 CQAS37 spikelet number
49 CQAS34 seed number
50 CQAS36 1000-seed weight
51 CQAS33 spikelet density
52 CQAS32 spikelet number
53 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Lan; Shen Rongxin; Chen Le-Tian; Liu Yao-Guang; Characterization of a novel DUF1618 gene family in rice. Journal of integrative plant biology 2014:56
PMID [24237627]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India