Rice gene details
Searching for LOC_Os03g15033 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g15033.1 283 94 113 PF00226.23 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEJ061 leaf area
2 AQEJ063 leaf width
3 AQEJ065 leaf width
4 AQEJ071 leaf width
5 AQEJ073 leaf length to width ratio
6 CQAW8 root number
7 CQE26 carbon content
8 CQE27 grain number
9 CQF5 soluble protein content
10 AQEA202 days to heading
11 AQEA203 days to heading
12 AQEA204 days to heading
13 AQEA205 days to heading
14 AQEA206 days to heading
15 AQEA207 days to heading
16 AQEA208 days to heading
17 AQEI052 leaf senescence
18 AQEI065 leaf senescence
19 AQEI131 leaf senescence
20 AQFJ061 grain yield per plant
21 AQCK007 days to heading
22 CQE16 days to heading
23 AQCI008 phosphorus sensitivity
24 AQCV024 chalkiness of endosperm
25 AQDQ028 panicle length
26 AQDQ029 panicle length
27 AQAC032 total amylase activity
28 AQAG009 tiller number
29 AQEX008 root length
30 AQGI001 root dry weight
31 AQGI011 root dry weight
32 AQGI110 biomass yield
33 AQGI111 biomass yield
34 AQAL004 deep root dry weight
35 AQAL010 deep root to shoot ratio
36 AQGC006 penetrated root number
37 AQGC012 penetrated root number
38 AQGC015 root penetration index
39 AQDL005 stomatal closure time
40 AQCO005 spikelet fertility
41 AQCO115 spikelet fertility
42 AQCO118 spikelet fertility
43 AQCP005 spikelet fertility
44 AQGC021 root penetration index
45 AQDI004 hybrid incompatibilty
46 AQDK007 grain yield
47 AQCU106 spikelet fertility
48 AQEE021 crushed grain percentage
49 CQX11 panicle length
50 AQDL002 stomatal resistance
51 AQFU015 amylose content
52 CQAS38 seed number
53 CQAS37 spikelet number
54 CQAS34 seed number
55 CQAS36 1000-seed weight
56 CQAS33 spikelet density
57 CQAS32 spikelet number
58 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India