Rice gene details
Searching for LOC_Os03g15360 [nmrA-like family domain containing protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g15360.1 359 22 318 PF05368.5 NmrA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
 
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009744 response to sucrose stimulus  
3 GO:0009749 response to glucose stimulus  
4 GO:0008150 biological_process (RGAP)
5 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 MCE:1000037 sucrose (+)
3 MCE:1000241 D-glucose (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5461 betanidin degradation
2 PWY-641 proanthocyanidin biosynthesis from flavanols

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEJ061 leaf area
2 AQEJ063 leaf width
3 AQEJ065 leaf width
4 AQEJ071 leaf width
5 AQEJ073 leaf length to width ratio
6 CQAW8 root number
7 CQE26 carbon content
8 CQE27 grain number
9 CQF5 soluble protein content
10 AQEA202 days to heading
11 AQEA203 days to heading
12 AQEA204 days to heading
13 AQEA205 days to heading
14 AQEA206 days to heading
15 AQEA207 days to heading
16 AQEA208 days to heading
17 AQCK007 days to heading
18 CQE16 days to heading
19 AQCI008 phosphorus sensitivity
20 AQCV024 chalkiness of endosperm
21 AQDQ028 panicle length
22 AQDQ029 panicle length
23 AQAC032 total amylase activity
24 AQAG009 tiller number
25 AQEX008 root length
26 AQGI001 root dry weight
27 AQGI011 root dry weight
28 AQGI110 biomass yield
29 AQGI111 biomass yield
30 AQAL004 deep root dry weight
31 AQAL010 deep root to shoot ratio
32 AQGC006 penetrated root number
33 AQGC012 penetrated root number
34 AQGC015 root penetration index
35 AQDL005 stomatal closure time
36 AQCO005 spikelet fertility
37 AQCO115 spikelet fertility
38 AQCO118 spikelet fertility
39 AQCP005 spikelet fertility
40 AQGC021 root penetration index
41 AQDI004 hybrid incompatibilty
42 AQDK007 grain yield
43 AQCU106 spikelet fertility
44 AQEE021 crushed grain percentage
45 CQX11 panicle length
46 AQDL002 stomatal resistance
47 AQFU015 amylose content
48 CQAS38 seed number
49 CQAS37 spikelet number
50 CQAS34 seed number
51 CQAS36 1000-seed weight
52 CQAS33 spikelet density
53 CQAS32 spikelet number
54 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000288 7 days post-anthesis stage (+)
3 MCP:1000489 3 days post-anthesis stage (+)
4 MCP:1000518 seedling development stage (+)
5 MCP:1000533 early tillering stage (+)
6 MCP:1000534 late tillering stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000160 middle part of root (+)
2 PO:0000003 whole plant (+)
3 PO:0000025 root tip (+)
4 PO:0009001 fruit (+)
5 PO:0009089 endosperm (+)
6 PO:0020103 flag leaf (+)
7 PO:0020104 leaf sheath (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chen Xiaoqiong; Itani Tomio; Wu Xianjun; Chikawa Yuuki; Irifune Kohei; Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties. Plant signaling & behavior 2014:8
PMID [24389954]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India