Rice gene details
Searching for LOC_Os03g16170 [protein phosphatase 2C, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g16170.1 405 76 392 PF00481.13 PP2C
2 LOC_Os03g16170.2 295 76 282 PF00481.13 PP2C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  8
IR64InfloresenceFC
  10
IR64 Root FC
  6

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE17 seed dormancy
2 AQCY062 filled grain number
3 AQGI040 root dry weight
4 AQGI052 root dry weight
5 AQCK001 seed dormancy
6 AQCV032 chalkiness of endosperm
7 AQCV036 chalkiness of endosperm
8 AQCV040 chalkiness of endosperm
9 AQEJ061 leaf area
10 AQEJ063 leaf width
11 AQEJ065 leaf width
12 AQEJ071 leaf width
13 AQEJ073 leaf length to width ratio
14 CQAW8 root number
15 CQE26 carbon content
16 CQE27 grain number
17 CQF5 soluble protein content
18 AQEA202 days to heading
19 AQEA203 days to heading
20 AQEA204 days to heading
21 AQEA205 days to heading
22 AQEA206 days to heading
23 AQEA207 days to heading
24 AQEA208 days to heading
25 AQCK007 days to heading
26 CQE16 days to heading
27 AQCI008 phosphorus sensitivity
28 AQDQ028 panicle length
29 AQDQ029 panicle length
30 AQAL004 deep root dry weight
31 AQAL010 deep root to shoot ratio
32 AQGC006 penetrated root number
33 AQGC012 penetrated root number
34 AQGC015 root penetration index
35 AQDL005 stomatal closure time
36 AQCO005 spikelet fertility
37 AQCO115 spikelet fertility
38 AQCO118 spikelet fertility
39 AQCP005 spikelet fertility
40 AQCU106 spikelet fertility
41 AQEE021 crushed grain percentage
42 CQX11 panicle length
43 AQDL002 stomatal resistance
44 AQFU015 amylose content
45 CQAS38 seed number
46 CQAS37 spikelet number
47 CQAS34 seed number
48 CQAS36 1000-seed weight
49 CQAS33 spikelet density
50 CQAS32 spikelet number
51 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os05g12260 - LOC_Os03g16170 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
2 LOC_Os05g12260 - --- LOC_Os03g16170 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
3 LOC_Os07g42940 - --- LOC_Os03g16170 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


3  Kim Hyunmi; Hwang Hyunsik; Hong Jung-Woo; Lee Young-Na; Ahn Il Pyung; Yoon In Sun; Yoo Sang-Dong; Lee Sukchan; Lee Sung Chul; Kim Beom-Gi; A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. Journal of Experimental Botany 2011:
PMID [22071266]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India