Rice gene details
Searching for LOC_Os03g17350 [white-brown complex homolog protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g17350.1 788 168 358 PF00005.19 ABC_tran
2 LOC_Os03g17350.1 788 481 691 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  22
N22 Root FC
  -8
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  -1
IR64 Root FC
  -4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009651 response to salt stress  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0009739 response to gibberellin stimulus  
7 GO:0009751 response to salicylic acid stimulus  
8 GO:0009753 response to jasmonic acid stimulus  
9 GO:0006810 transport (RGAP)
10 GO:0009987 cellular process (RGAP)
11 GO:0009056 catabolic process (RGAP)
12 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007070 indole acetic acid regimen (+)
5 EO:0007080 jasmonic acid regimen (+)
6 EO:0007105 abscisic acid regimen (+)
7 EO:0007173 warm/hot temperature regimen (+)
8 EO:0007187 salicylic acid regimen (+)
9 EO:0007282 standing water (+)
10 EO:0007290 kinetin regimen (+)
11 EO:0007332 cold air temperature regimen (+)
12 MCE:1000023 benzyl aminopurine (BPA) (+)
13 MCE:1000044 mannitol (+)
14 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
15 MCE:1000063 epibrassinolide (+)
16 MCE:1000195 hypoxic environment (+)
17 MCE:1000330 nitrogen flushing (+)
18 MCE:1000331 deoxygenated 0.1% (w/v) agar nutrient solution (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGP071 1000-seed weight
2 CQH13 root penetration index
3 AQDK008 grain yield
4 CQE17 seed dormancy
5 AQCY062 filled grain number
6 AQGI040 root dry weight
7 AQGI052 root dry weight
8 AQCK001 seed dormancy
9 AQCV032 chalkiness of endosperm
10 AQCV036 chalkiness of endosperm
11 AQCV040 chalkiness of endosperm
12 AQEJ061 leaf area
13 AQEJ063 leaf width
14 AQEJ065 leaf width
15 AQEJ071 leaf width
16 AQEJ073 leaf length to width ratio
17 CQAW8 root number
18 CQE26 carbon content
19 CQE27 grain number
20 CQF5 soluble protein content
21 AQEA202 days to heading
22 AQEA203 days to heading
23 AQEA204 days to heading
24 AQEA205 days to heading
25 AQEA206 days to heading
26 AQEA207 days to heading
27 AQEA208 days to heading
28 AQCK007 days to heading
29 CQE16 days to heading
30 AQCI008 phosphorus sensitivity
31 AQDQ028 panicle length
32 AQDQ029 panicle length
33 AQAL004 deep root dry weight
34 AQAL010 deep root to shoot ratio
35 AQGC006 penetrated root number
36 AQGC012 penetrated root number
37 AQGC015 root penetration index
38 AQDL005 stomatal closure time
39 AQCO005 spikelet fertility
40 AQCO115 spikelet fertility
41 AQCO118 spikelet fertility
42 AQCP005 spikelet fertility
43 AQCU106 spikelet fertility
44 AQEE021 crushed grain percentage
45 CQX11 panicle length
46 AQDL002 stomatal resistance
47 AQFU015 amylose content
48 CQAS38 seed number
49 CQAS37 spikelet number
50 CQAS34 seed number
51 CQAS36 1000-seed weight
52 CQAS33 spikelet density
53 CQAS32 spikelet number
54 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000422 cortical parenchyma cell (+)
2 MCP:1000559 long adventitious root (+)
3 MCP:1000560 short adventitious root (+)
4 MCP:1000574 root segment, 0-15mm from root tip (+)
5 MCP:1000575 root segment, 15-25mm from root tip (+)
6 MCP:1000576 root segment, 50-70mm from root tip (+)
7 MCP:1000577 root segment, 5-20mm below root-shoot junction (+)
8 PO:0005051 hypodermis (+)
9 PO:0005059 root endodermis (+)
10 PO:0005427 sclerenchyma (+)
11 PO:0005772 exodermis (+)
12 PO:0006036 root epidermis (+)
13 PO:0008037 seedling (+)
14 PO:0009005 root (+)
15 PO:0009006 shoot system (+)
16 PO:0020124 root stele (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000151 alcohol content (+)
2 MCT:1000159 alcohol C22 content (+)
3 MCT:1000247 fatty acids content (+)
4 MCT:1000251 fatty acid C16 content (+)
5 MCT:1000252 fatty acid C18 content (+)
6 MCT:1000255 fatty acid C24 content (+)
7 MCT:1000256 fatty acid C26 content (+)
8 MCT:1000257 fatty acid C28 content (+)
9 MCT:1000258 fatty acid C30 content (+)
10 MCT:1000601 root flexibility (+)
11 MCT:1000602 presence of brown root color (+)
12 MCT:1000606 presence of casparian strips (+)
13 MCT:1000607 presence of suberin lamellae (+)
14 MCT:1000608 omega hydroxylic acid content (+)
15 MCT:1000609 diacids content (+)
16 MCT:1000610 2-hydroxyacid acids content (+)
17 MCT:1000611 total aliphatic suberin content (+)
18 MCT:1000612 coumaric acid content (+)
19 MCT:1000613 total aromatic suberin content (+)
20 MCT:1000614 alcohol C20 content (+)
21 MCT:1000615 alcohol C24 content (+)
22 MCT:1000616 omega hydroxylic acid C16 content (+)
23 MCT:1000617 omega hydroxylic acid C18 content (+)
24 MCT:1000618 omega hydroxylic acid C20 content (+)
25 MCT:1000619 omega hydroxylic acid C24 content (+)
26 MCT:1000620 omega hydroxylic acid C26 content (+)
27 MCT:1000621 omega hydroxylic acid C28 content (+)
28 MCT:1000622 omega hydroxylic acid C30 content (+)
29 MCT:1000623 diacids C16 content (+)
30 MCT:1000624 diacids C18 content (+)
31 MCT:1000625 2-hydroxyacid acids C28 content (+)
32 MCT:1000626 permeability of hypodermis (+)
33 TO:0000227 root length (+)
34 TO:0000675 ferulic acid content (+)
35 TO:0000731 lignin content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


2  Shiono Katsuhiro; Ando Miho; Nishiuchi Shunsaku; Takahashi Hirokazu; Watanabe Kohtaro; Nakamura Motoaki; Matsuo Yuichi; Yasuno Naoko; Yamanouchi Utako; Fujimoto Masaru; Takanashi Hideki; Ranathunge Kosala; Franke Rochus B; Shitan Nobukazu; Nishizawa Naoko K; Takamure Itsuro; Yano Masahiro; Tsutsumi Nobuhiro; Schreiber Lukas; Yazaki Kazufumi; Nakazono Mikio; Kato Kiyoaki; RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa). The Plant journal : for cell and molecular biology 2014:80
PMID [25041515]


3  Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India