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Searching for LOC_Os03g17350
[white-brown complex homolog protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g17350.1 |
788 |
168 |
358 |
PF00005.19 |
ABC_tran |
2 |
LOC_Os03g17350.1 |
788 |
481 |
691 |
PF01061.16 |
ABC2_membrane |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016787 |
hydrolase activity |
(RGAP) |
2 |
GO:0005215 |
transporter activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]
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2 |
Shiono Katsuhiro; Ando Miho; Nishiuchi Shunsaku; Takahashi Hirokazu; Watanabe Kohtaro; Nakamura Motoaki; Matsuo Yuichi; Yasuno Naoko; Yamanouchi Utako; Fujimoto Masaru; Takanashi Hideki; Ranathunge Kosala; Franke Rochus B; Shitan Nobukazu; Nishizawa Naoko K; Takamure Itsuro; Yano Masahiro; Tsutsumi Nobuhiro; Schreiber Lukas; Yazaki Kazufumi; Nakazono Mikio; Kato Kiyoaki; RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa). The Plant journal : for cell and molecular biology 2014:80
PMID [25041515]
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3 |
Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]
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