Rice gene details
Searching for LOC_Os03g17700 [CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g17700.1 370 35 322 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  11
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004672 protein kinase activity  
2 GO:0004707 MAP kinase activity  
3 GO:0005515 protein binding (RGAP)
4 GO:0016301 kinase activity (RGAP)
5 GO:0004871 signal transducer activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0002238 response to molecule of fungal origin  
2 GO:0006468 protein phosphorylation  
3 GO:0006950 response to stress  
4 GO:0009266 response to temperature stimulus  
5 GO:0009409 response to cold  
6 GO:0009412 response to heavy metal  
7 GO:0009414 response to water deprivation  
8 GO:0009611 response to wounding  
9 GO:0009617 response to bacterium  
10 GO:0009620 response to fungus  
11 GO:0009628 response to abiotic stimulus  
12 GO:0009632 freezing tolerance  
13 GO:0009633 drought tolerance  
14 GO:0009635 response to herbicide  
15 GO:0009651 response to salt stress  
16 GO:0009723 response to ethylene stimulus  
17 GO:0009737 response to abscisic acid stimulus  
18 GO:0009744 response to sucrose stimulus  
19 GO:0009751 response to salicylic acid stimulus  
20 GO:0009753 response to jasmonic acid stimulus  
21 GO:0010193 response to ozone  
22 GO:0010225 response to UV-C  
23 GO:0010477 response to sulfur dioxide  
24 GO:0042538 hyperosmotic salinity response  
25 GO:0042542 response to hydrogen peroxide  
26 GO:0042742 defense response to bacterium  
27 GO:0046685 response to arsenic-containing substance  
28 GO:0046686 response to cadmium ion  
29 GO:0046898 response to cycloheximide  
30 GO:0050832 defense response to fungus  
31 GO:0071226 cellular response to molecule of fungal origin  
32 GO:0080027 response to herbivore  
33 GO:0008152 metabolic process (RGAP)
34 GO:0009987 cellular process (RGAP)
35 GO:0009719 response to endogenous stimulus (RGAP)
36 GO:0007165 signal transduction (RGAP)
37 GO:0006950 response to stress (RGAP)
38 GO:0009628 response to abiotic stimulus (RGAP)
39 GO:0006464 protein modification process (RGAP)
40 GO:0007275 multicellular organismal development (RGAP)
41 GO:0009908 flower development (RGAP)
42 GO:0008150 biological_process (RGAP)
43 GO:0009058 biosynthetic process (RGAP)
44 GO:0019748 secondary metabolic process (RGAP)
45 GO:0009791 post-embryonic development (RGAP)
46 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007129 UV-C light regimen (+)
5 EO:0007162 continuous light regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007175 temperature environment (+)
8 EO:0007187 salicylic acid regimen (+)
9 EO:0007196 light regimen (+)
10 EO:0007198 water environment (+)
11 EO:0007223 cadmium chloride (+)
12 EO:0007243 Pseudomonas glumae (+)
13 EO:0007270 continuous dark (no light) regimen (+)
14 EO:0007279 Chilo suppressalis (+)
15 EO:0007317 Nilaparvata lugens (+)
16 EO:0007332 cold air temperature regimen (+)
17 EO:0007373 mechanical damage (+)
18 EO:0007383 watering regimen (-)
19 EO:0007404 drought environment (+)
20 EO:0007415 hydrogen peroxide (+)
21 EO:0007527 cupric sulfate (+)
22 MCE:1000013 ethephon (+)
23 MCE:1000037 sucrose (+)
24 MCE:1000038 cycloheximide (+)
25 MCE:1000039 cantharidin (+)
26 MCE:1000040 endothall (+)
27 MCE:1000041 okadaic acid (+)
28 MCE:1000042 sulfurdioxide (SO2) (+)
29 MCE:1000043 ozone regimen (+)
30 MCE:1000069 dessication/dehydration stress (+)
31 MCE:1000074 chitosan (+)
32 MCE:1000114 arsenite (+)
33 MCE:1000173 cadmium nutrient regimen (+)
34 MCE:1000198 Magnaporthe grisea isolate IC17-18/1 (+)
35 MCE:1000199 Magnaporthe grisea isolate IC17-18/1-2 (+)
36 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)
37 MCE:1000282 mercurous chlorate (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS27 plant height
2 AQFA007 grain length
3 AQFA014 grain length to width ratio
4 AQFE010 days to heading
5 AQGP071 1000-seed weight
6 CQH13 root penetration index
7 AQDK008 grain yield
8 CQE17 seed dormancy
9 AQCY062 filled grain number
10 AQGI040 root dry weight
11 AQGI052 root dry weight
12 AQCK001 seed dormancy
13 AQCV032 chalkiness of endosperm
14 AQCV036 chalkiness of endosperm
15 AQCV040 chalkiness of endosperm
16 AQEJ061 leaf area
17 AQEJ063 leaf width
18 AQEJ065 leaf width
19 AQEJ071 leaf width
20 AQEJ073 leaf length to width ratio
21 CQAW8 root number
22 CQE26 carbon content
23 CQE27 grain number
24 CQF5 soluble protein content
25 AQEA202 days to heading
26 AQEA203 days to heading
27 AQEA204 days to heading
28 AQEA205 days to heading
29 AQEA206 days to heading
30 AQEA207 days to heading
31 AQEA208 days to heading
32 AQCK007 days to heading
33 CQE16 days to heading
34 AQCI008 phosphorus sensitivity
35 AQDQ028 panicle length
36 AQDQ029 panicle length
37 AQAL004 deep root dry weight
38 AQAL010 deep root to shoot ratio
39 AQGC006 penetrated root number
40 AQGC012 penetrated root number
41 AQGC015 root penetration index
42 AQDL005 stomatal closure time
43 AQCO005 spikelet fertility
44 AQCO115 spikelet fertility
45 AQCO118 spikelet fertility
46 AQCP005 spikelet fertility
47 AQCU106 spikelet fertility
48 AQEE021 crushed grain percentage
49 CQX11 panicle length
50 AQDL002 stomatal resistance
51 AQFU015 amylose content
52 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000230 third leaf from top (+)
2 MCP:1000315 second leaf from base (+)
3 MCP:1000499 fourth leaf from top (+)
4 PO:0000003 whole plant (+)
5 PO:0000006 plant protoplast (+)
6 PO:0008037 seedling (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009025 vascular leaf (+)
10 PO:0009047 stem (+)
11 PO:0009066 anther (+)
12 PO:0020103 flag leaf (+)
13 PO:0020104 leaf sheath (+)
14 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000002 lesion number (+)
2 MCT:1000012 survival rate (+)
3 MCT:1000022 lesion size (+)
4 MCT:1000034 superoxide dismutase (SOD) activity (+)
5 MCT:1000044 ascorbate peroxidase activity (APX) (+)
6 MCT:1000096 salicylic acid content (+)
7 MCT:1000212 trypsin protease inhibitor activity (+)
8 MCT:1000313 kinase activity (+)
9 MCT:1000351 relative disease severity (+)
10 MCT:1000353 presence of brownish stripes on leaf (+)
11 MCT:2000001 bacterial colony forming units (+)
12 MCT:2000006 mass of rice stripped stem borer (SSB) larva (+)
13 MCT:2000008 brown planthopper (BPH) survival rate (+)
14 MCT:2000009 number of adult female brown planthopper(BPH) per plant (+)
15 MCT:2000011 relative fungal growth (+)
16 TO:0000112 disease resistance (+)
17 TO:0002668 jasmonic acid content (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os01g32660 - LOC_Os03g17700 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wen Feng; Qin Tingting; Wang Yao; Dong Wen; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice. Journal of integrative plant biology 2014:
PMID [24912543]


Wang Qi; Li Jiancai; Hu Lingfei; Zhang Tongfang; Zhang Guren; Lou Yonggen; OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice. Plant Cell Reports 2013:
PMID [23344857]


Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


Zhang Hong; Ni Lan; Liu Yanpei; Wang Yunfei; Zhang Aying; Tan Mingpu; Jiang Mingyi; The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice. Journal of integrative plant biology 2012:54
PMID [22693960]


Lu Jing; Ju Hongping; Zhou Guoxin; Zhu Chuanshu; Erb Matthias; Wang Xiaopeng; Wang Peng; Lou Yonggen; An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice. The Plant Journal 2011:
PMID [21831212]


Rao Kudupudi Prabhakara; Vani Gubbala; Kumar Kundan; Wankhede Dhammaprakash Pandhari; Misra Mohit; Gupta Meetu; Sinha Alok Krishna; Arsenic stress activates MAP kinase in rice roots and leaves. Archives of Biochemistry and Biophysics 2010:
PMID [21081102]


Lee Mi-Ok; Cho Kyoungwon; Kim So-Hee; Jeong Seung-Hee; Kim Jung-A; Jung Young-Ho; Shim Jaekyung; Shibato Junko; Rakwal Randeep; Tamogami Shigeru; Kubo Akihiro; Agrawal Ganesh Kumar; Jwa Nam-Soo; Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level. Planta 2008:227
PMID [18066586]


Katou Shinpei; Kuroda Katsushi; Seo Shigemi; Yanagawa Yuki; Tsuge Tomohiko; Yamazaki Muneo; Miyao Akio; Hirochika Hirohiko; Ohashi Yuko; A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Plant & Cell Physiology 2007:48
PMID [17218330]


Xiong Lizhong; Yang Yinong; Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. The Plant Cell 2003:15
PMID [12615946]


10  Agrawal Ganesh K; Rakwal Randeep; Iwahashi Hitoshi; Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues. Biochemical and Biophysical Research Communications 2002:294
PMID [12074577]


11  Wen Jiang-Qi; Oono Kiyoharu; Imai Ryozo; Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice. Plant Physiology 2002:129
PMID [12177502]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India