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Searching for LOC_Os03g17790
[OsRCI2-5 - Putative low temperature and salt responsive protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g17790.1 |
55 |
4 |
54 |
PF01679.9 |
UPF0057 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009414 |
response to water deprivation |
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2 |
GO:0006950 |
response to stress |
(RGAP) |
3 |
GO:0009628 |
response to abiotic stimulus |
(RGAP) |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007173 |
warm/hot temperature regimen |
(+) |
2 |
EO:0007174 |
cold temperature regimen |
(+) |
3 |
EO:0007383 |
watering regimen |
(+) |
4 |
EO:0007404 |
drought environment |
(+) |
5 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007014 |
booting |
(+) |
2 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
3 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
4 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009051 |
spikelet |
(+) |
3 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Li L; Li N; Song S F; Li Y X; Xia X J; Fu X Q; Chen G H; Deng H F; Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [24938613]
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