Rice gene details
Searching for LOC_Os03g17790 [OsRCI2-5 - Putative low temperature and salt responsive protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g17790.1 55 4 54 PF01679.9 UPF0057
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  10
N22InfloresenceFC
  8
N22 Root FC
  6
IR64 Flag-leaf FC
  14
IR64InfloresenceFC
  3
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0006950 response to stress (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0005623 cell (RGAP)
3 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007174 cold temperature regimen (+)
3 EO:0007383 watering regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDW001 days to heading
2 CQAS27 plant height
3 AQFA007 grain length
4 AQFA014 grain length to width ratio
5 AQFE010 days to heading
6 AQGP071 1000-seed weight
7 CQH13 root penetration index
8 AQDK008 grain yield
9 CQE17 seed dormancy
10 AQCY062 filled grain number
11 AQGI040 root dry weight
12 AQGI052 root dry weight
13 AQCK001 seed dormancy
14 AQCV032 chalkiness of endosperm
15 AQCV036 chalkiness of endosperm
16 AQCV040 chalkiness of endosperm
17 AQEJ061 leaf area
18 AQEJ063 leaf width
19 AQEJ065 leaf width
20 AQEJ071 leaf width
21 AQEJ073 leaf length to width ratio
22 CQAW8 root number
23 CQE26 carbon content
24 CQE27 grain number
25 CQF5 soluble protein content
26 AQEA202 days to heading
27 AQEA203 days to heading
28 AQEA204 days to heading
29 AQEA205 days to heading
30 AQEA206 days to heading
31 AQEA207 days to heading
32 AQEA208 days to heading
33 AQCK007 days to heading
34 CQE16 days to heading
35 AQCI008 phosphorus sensitivity
36 AQDQ028 panicle length
37 AQDQ029 panicle length
38 AQAL004 deep root dry weight
39 AQAL010 deep root to shoot ratio
40 AQGC006 penetrated root number
41 AQGC012 penetrated root number
42 AQGC015 root penetration index
43 AQDL005 stomatal closure time
44 AQCO005 spikelet fertility
45 AQCO115 spikelet fertility
46 AQCO118 spikelet fertility
47 AQCP005 spikelet fertility
48 AQCU106 spikelet fertility
49 AQEE021 crushed grain percentage
50 CQX11 panicle length
51 AQDL002 stomatal resistance
52 AQFU015 amylose content
53 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007014 booting (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007065 LP.05 five leaves visible (+)
4 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009051 spikelet (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000005 re-growth of seedling (+)
2 TO:0000272 plant survivability (+)
3 TO:0000458 drought recovery (+)
4 TO:0002681 leaf curling (+)
5 TO:0002712 stay green trait (+)
6 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Li L; Li N; Song S F; Li Y X; Xia X J; Fu X Q; Chen G H; Deng H F; Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [24938613]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India