Rice gene details
Searching for LOC_Os03g17860 [OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g17860.1 148 30 135 PF00085.12 Thioredoxin
2 LOC_Os03g17860.2 126 30 121 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFT003 osmotic adjustment capacity
2 AQDW001 days to heading
3 CQAS27 plant height
4 AQFA007 grain length
5 AQFA014 grain length to width ratio
6 AQFE010 days to heading
7 AQGP071 1000-seed weight
8 CQH13 root penetration index
9 AQDK008 grain yield
10 CQE17 seed dormancy
11 AQCY062 filled grain number
12 AQGI040 root dry weight
13 AQGI052 root dry weight
14 AQCK001 seed dormancy
15 AQCV032 chalkiness of endosperm
16 AQCV036 chalkiness of endosperm
17 AQCV040 chalkiness of endosperm
18 AQEJ061 leaf area
19 AQEJ063 leaf width
20 AQEJ065 leaf width
21 AQEJ071 leaf width
22 AQEJ073 leaf length to width ratio
23 CQAW8 root number
24 CQE26 carbon content
25 CQE27 grain number
26 CQF5 soluble protein content
27 AQEA202 days to heading
28 AQEA203 days to heading
29 AQEA204 days to heading
30 AQEA205 days to heading
31 AQEA206 days to heading
32 AQEA207 days to heading
33 AQEA208 days to heading
34 AQCK007 days to heading
35 CQE16 days to heading
36 AQCI008 phosphorus sensitivity
37 AQDQ028 panicle length
38 AQDQ029 panicle length
39 AQAL004 deep root dry weight
40 AQAL010 deep root to shoot ratio
41 AQGC006 penetrated root number
42 AQGC012 penetrated root number
43 AQGC015 root penetration index
44 AQDL005 stomatal closure time
45 AQCO005 spikelet fertility
46 AQCO115 spikelet fertility
47 AQCO118 spikelet fertility
48 AQCP005 spikelet fertility
49 AQCU106 spikelet fertility
50 AQEE021 crushed grain percentage
51 CQX11 panicle length
52 AQDL002 stomatal resistance
53 AQFU015 amylose content
54 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 PO:0007022 imbibition (-)
9 PO:0007041 inflorescence emergence from flag leaf sheath (-)
10 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
11 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020103 flag leaf (-)
14 PO:0020104 leaf sheath (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India