Rice gene details
Searching for LOC_Os03g18200 [heat shock protein DnaJ, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g18200.1 664 29 90 PF00226.23 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0019538 protein metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009856 pollination (RGAP)
9 GO:0016043 cellular component organization (RGAP)
10 GO:0009653 anatomical structure morphogenesis (RGAP)
11 GO:0030154 cell differentiation (RGAP)
12 GO:0016049 cell growth (RGAP)
13 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005783 endoplasmic reticulum (RGAP)
2 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDW002 seed dormancy
2 AQFT003 osmotic adjustment capacity
3 AQDW001 days to heading
4 CQAS27 plant height
5 AQFA007 grain length
6 AQFA014 grain length to width ratio
7 AQFE010 days to heading
8 AQGP071 1000-seed weight
9 CQH13 root penetration index
10 AQDK008 grain yield
11 CQE17 seed dormancy
12 AQCY062 filled grain number
13 AQGI040 root dry weight
14 AQGI052 root dry weight
15 AQCK001 seed dormancy
16 AQCV032 chalkiness of endosperm
17 AQCV036 chalkiness of endosperm
18 AQCV040 chalkiness of endosperm
19 AQEJ061 leaf area
20 AQEJ063 leaf width
21 AQEJ065 leaf width
22 AQEJ071 leaf width
23 AQEJ073 leaf length to width ratio
24 CQAW8 root number
25 CQE26 carbon content
26 CQE27 grain number
27 CQF5 soluble protein content
28 AQEA202 days to heading
29 AQEA203 days to heading
30 AQEA204 days to heading
31 AQEA205 days to heading
32 AQEA206 days to heading
33 AQEA207 days to heading
34 AQEA208 days to heading
35 AQCK007 days to heading
36 CQE16 days to heading
37 AQCI008 phosphorus sensitivity
38 AQDQ028 panicle length
39 AQDQ029 panicle length
40 AQAL004 deep root dry weight
41 AQAL010 deep root to shoot ratio
42 AQGC006 penetrated root number
43 AQGC012 penetrated root number
44 AQGC015 root penetration index
45 AQDL005 stomatal closure time
46 AQCO005 spikelet fertility
47 AQCO115 spikelet fertility
48 AQCO118 spikelet fertility
49 AQCP005 spikelet fertility
50 AQCU106 spikelet fertility
51 AQEE021 crushed grain percentage
52 CQX11 panicle length
53 AQDL002 stomatal resistance
54 AQFU015 amylose content
55 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India