Rice gene details
Searching for LOC_Os03g18820 [glycosyltransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g18820.1 449 137 381 PF05637.4 Glyco_transf_34
2 LOC_Os03g18820.2 449 137 381 PF05637.4 Glyco_transf_34
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  4
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0033843 xyloglucan 6-xylosyltransferase activity  
2 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009653 anatomical structure morphogenesis (RGAP)
6 GO:0030154 cell differentiation (RGAP)
7 GO:0007275 multicellular organismal development (RGAP)
8 GO:0016049 cell growth (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007171 pH regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCZ001 seed dormancy
2 AQFT003 osmotic adjustment capacity
3 CQAS27 plant height
4 AQFA007 grain length
5 AQFA014 grain length to width ratio
6 AQFE010 days to heading
7 AQGP071 1000-seed weight
8 CQH13 root penetration index
9 AQDK008 grain yield
10 CQE17 seed dormancy
11 AQCY062 filled grain number
12 AQGI040 root dry weight
13 AQGI052 root dry weight
14 AQCK001 seed dormancy
15 AQEJ061 leaf area
16 AQEJ063 leaf width
17 AQEJ065 leaf width
18 AQEJ071 leaf width
19 AQEJ073 leaf length to width ratio
20 CQAW8 root number
21 CQE26 carbon content
22 CQE27 grain number
23 CQF5 soluble protein content
24 AQEA202 days to heading
25 AQEA203 days to heading
26 AQEA204 days to heading
27 AQEA205 days to heading
28 AQEA206 days to heading
29 AQEA207 days to heading
30 AQEA208 days to heading
31 AQCK007 days to heading
32 CQE16 days to heading
33 AQDQ028 panicle length
34 AQDQ029 panicle length
35 AQAL004 deep root dry weight
36 AQAL010 deep root to shoot ratio
37 AQGC006 penetrated root number
38 AQGC012 penetrated root number
39 AQGC015 root penetration index
40 AQDL005 stomatal closure time
41 AQCO005 spikelet fertility
42 AQCO115 spikelet fertility
43 AQCO118 spikelet fertility
44 AQCP005 spikelet fertility
45 AQCU106 spikelet fertility
46 AQEE021 crushed grain percentage
47 CQX11 panicle length
48 AQDL002 stomatal resistance
49 AQFU015 amylose content
50 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000535 root hair (+)
2 PO:0000025 root tip (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000456 root hair number (+)
2 MCT:1000627 presence of irregular shaped epidermal cells (+)
3 MCT:1000628 presence of bubble-like extrusions at root hair tip (+)
4 MCT:1000630 XXG xyloglucan content (+)
5 MCT:1000631 XLG xyloglucan content (+)
6 MCT:1000632 XXXG xyloglucan content (+)
7 MCT:1000633 XXLG xyloglucan content (+)
8 MCT:1000634 XXFG xyloglucan content (+)
9 MCT:1000635 XLLG xyloglucan content (+)
10 MCT:1000636 XLFG xyloglucan content (+)
11 TO:0000280 seedling vigor (+)
12 TO:0002665 root hair length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Chuang; Li Shuai; Ng Sophia; Zhang Baocai; Zhou Yihua; Whelan James; Wu Ping; Shou Huixia; Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa. Journal of experimental botany 2014:65
PMID [24834920]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India