Rice gene details
Searching for LOC_Os03g18850 [pathogenesis-related Bet v I family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g18850.1 161 2 155 PF00407.11 Bet_v_I
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  -4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004540 ribonuclease activity  
2 GO:0003674 molecular_function (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009416 response to light stimulus  
4 GO:0009611 response to wounding  
5 GO:0009620 response to fungus  
6 GO:0009651 response to salt stress  
7 GO:0009751 response to salicylic acid stimulus  
8 GO:0009753 response to jasmonic acid stimulus  
9 GO:0030912 response to deep water  
10 GO:0034059 response to anoxia  
11 GO:0042221 response to chemical stimulus  
12 GO:0042542 response to hydrogen peroxide  
13 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007162 continuous light regimen (+)
6 EO:0007187 salicylic acid regimen (+)
7 EO:0007332 cold air temperature regimen (+)
8 EO:0007373 mechanical damage (+)
9 EO:0007402 fungal elicitor (+)
10 EO:0007415 hydrogen peroxide (+)
11 MCE:1000010 submergence stress (+)
12 MCE:1000013 ethephon (+)
13 MCE:1000039 cantharidin (+)
14 MCE:1000040 endothall (+)
15 MCE:1000041 okadaic acid (+)
16 MCE:1000069 dessication/dehydration stress (+)
17 MCE:1000203 dark regimen (+)
18 MCE:1000266 Magnaporthe grisea race KJ 401 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCZ001 seed dormancy
2 AQFT003 osmotic adjustment capacity
3 CQAS27 plant height
4 AQFA007 grain length
5 AQFA014 grain length to width ratio
6 AQFE010 days to heading
7 AQGP071 1000-seed weight
8 CQH13 root penetration index
9 AQDK008 grain yield
10 CQE17 seed dormancy
11 AQCY062 filled grain number
12 AQGI040 root dry weight
13 AQGI052 root dry weight
14 AQCK001 seed dormancy
15 AQEJ061 leaf area
16 AQEJ063 leaf width
17 AQEJ065 leaf width
18 AQEJ071 leaf width
19 AQEJ073 leaf length to width ratio
20 CQAW8 root number
21 CQE26 carbon content
22 CQE27 grain number
23 CQF5 soluble protein content
24 AQEA202 days to heading
25 AQEA203 days to heading
26 AQEA204 days to heading
27 AQEA205 days to heading
28 AQEA206 days to heading
29 AQEA207 days to heading
30 AQEA208 days to heading
31 AQCK007 days to heading
32 CQE16 days to heading
33 AQDQ028 panicle length
34 AQDQ029 panicle length
35 AQAL004 deep root dry weight
36 AQAL010 deep root to shoot ratio
37 AQGC006 penetrated root number
38 AQGC012 penetrated root number
39 AQGC015 root penetration index
40 AQDL005 stomatal closure time
41 AQCO005 spikelet fertility
42 AQCO115 spikelet fertility
43 AQCO118 spikelet fertility
44 AQCP005 spikelet fertility
45 AQCU106 spikelet fertility
46 AQEE021 crushed grain percentage
47 CQX11 panicle length
48 AQDL002 stomatal resistance
49 AQFU015 amylose content
50 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000332 open flower stage (+)
2 MCP:1000333 closed flower stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
5 MCP:1000547 coleoptile senescence stage (+)
6 PO:0001054 4 leaf senescence stage (+)
7 PO:0001170 seed development stages (+)
8 PO:0007041 inflorescence emergence from flag leaf sheath (+)
9 PO:0007065 LP.05 five leaves visible (+)
10 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000100 upper leaf (+)
2 MCP:1000542 root segment, 5-10mm from root tip (+)
3 MCP:1000543 root segment, 10-15mm from root tip (+)
4 MCP:1000544 root segment, 15-20mm from root tip (+)
5 MCP:1000545 root segment, 20-25mm from root tip (+)
6 MCP:1000546 root segment, 25-30mm from root tip (+)
7 MCP:1000548 root segment, 0-5mm from root tip (+)
8 PO:0000005 cultured plant cell (+)
9 PO:0000036 leaf vascular system (+)
10 PO:0000272 protoxylem (+)
11 PO:0005020 vascular bundle (+)
12 PO:0005059 root endodermis (+)
13 PO:0005772 exodermis (+)
14 PO:0006077 protophloem (+)
15 PO:0006339 juvenile leaf (+)
16 PO:0008037 seedling (+)
17 PO:0009005 root (+)
18 PO:0009025 vascular leaf (+)
19 PO:0009037 lemma (+)
20 PO:0009038 palea (+)
21 PO:0009046 flower (+)
22 PO:0009047 stem (+)
23 PO:0009066 anther (-)
24 PO:0009072 ovary (-)
25 PO:0025034 leaf (+)
26 PO:0025281 pollen (-)
27 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kim Sun Tae; Yu Seok; Kang Young Hyun; Kim Sang Gon; Kim Jae-Yean; Kim Sun-Hyung; Kang Kyu Young; The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity. Plant cell reports 2008:27
PMID [18074138]


Huang Limin; Sun Qianwen; Qin Fujun; Li Chen; Zhao Yu; Zhou Dao-Xiu; Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice. Plant Physiology 2007:144
PMID [17468215]


Jwa N S; Kumar Agrawal G; Rakwal R; Park C H; Prasad Agrawal V; Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves. Biochemical and biophysical research communications 2001:286
PMID [11527396]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India