Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os03g19420 [nicotianamine synthase, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os03g19420.2 327 3 283 PF03059.8 NAS   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC N22InfloresenceFC N22 Root FC IR64 Flag-leaf FC IR64InfloresenceFC IR64 Root FC Functional details Molecular Function S. No. GO Id GO Description 1 GO:0016740 transferase activity (RGAP) Biological process S. No. GO Id GO Description 1 GO:0006879 cellular iron ion homeostasis   2 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid   3 GO:0010039 response to iron ion   4 GO:0010106 cellular response to iron ion starvation   5 GO:0032119 sequestering of zinc ion   6 GO:0051238 sequestering of metal ion   7 GO:0055076 transition metal ion homeostasis   8 GO:0009058 biosynthetic process (RGAP) 9 GO:0009987 cellular process (RGAP) Cellular component S. No. GO Id GO Description Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007171 pH regimen (+) 2 EO:0007242 iron nutrient regimen (+) 3 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+) 4 MCE:1000143 iron deficiency treatment (+) 5 MCE:1000176 silver thiosulphate regimen (+) 6 MCE:1000177 cobalt chloride regimen (CoCl2) (+) 7 MCE:1000180 grain polishing (+) 8 MCE:1000182 iron fertilizer regimen (+) 9 MCE:1000328 2-deoxymugineic acid (DMA) (+) 10 MCE:1000329 ethylenediaminetetraacetic acid (EDTA) (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 AQBY006 root to shoot ratio 2 AQDK011 panicle number 3 CQB4 plant height 4 AQEI053 leaf senescence 5 AQEI088 leaf senescence 6 AQB005 cool paste viscosity 7 AQBX007 panicle weight 8 AQBX008 panicle weight 9 AQBX026 panicle weight 10 AQBX027 panicle weight 11 AQDV017 harvest index 12 AQDV042 plant height 13 AQDV047 panicle length 14 AQDV056 1000-seed weight 15 AQG002 plant height 16 AQG006 panicle length 17 CQAB19 plant height 18 CQAB20 plant height 19 CQAB21 plant height 20 CQAB22 plant height 21 CQAB23 plant height 22 CQAB24 plant height 23 CQAX18 plant height 24 CQZ4 plant height 25 DQE18 leaf rolling 26 AQEL011 root number 27 AQCZ001 seed dormancy 28 AQFT003 osmotic adjustment capacity 29 CQAS27 plant height 30 AQFA007 grain length 31 AQFA014 grain length to width ratio 32 AQFE010 days to heading 33 CQH13 root penetration index 34 CQE17 seed dormancy 35 AQCY062 filled grain number 36 AQGI040 root dry weight 37 AQGI052 root dry weight 38 AQCK001 seed dormancy 39 AQEJ061 leaf area 40 AQEJ063 leaf width 41 AQEJ065 leaf width 42 AQEJ071 leaf width 43 AQEJ073 leaf length to width ratio 44 CQAW8 root number 45 CQE26 carbon content 46 CQE27 grain number 47 CQF5 soluble protein content 48 AQCK007 days to heading 49 CQE16 days to heading 50 AQDQ028 panicle length 51 AQDQ029 panicle length 52 AQAL004 deep root dry weight 53 AQAL010 deep root to shoot ratio 54 AQGC006 penetrated root number 55 AQGC012 penetrated root number 56 AQGC015 root penetration index 57 AQDL005 stomatal closure time 58 AQCO005 spikelet fertility 59 AQCO115 spikelet fertility 60 AQCO118 spikelet fertility 61 AQCP005 spikelet fertility 62 AQCU106 spikelet fertility 63 AQEE021 crushed grain percentage 64 CQX11 panicle length 65 AQDL002 stomatal resistance 66 AQFU015 amylose content 67 AQFC001 elongation ability Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000326 subaleurone layer (+) 2 MCP:1000513 inner layers of endosperm (-) 3 PO:0000001 embryo proper (+) 4 PO:0005360 aleurone layer (+) 5 PO:0009001 fruit (+) 6 PO:0009005 root (+) 7 PO:0009006 shoot system (+) 8 PO:0009089 endosperm (+) 9 PO:0020110 scutellum (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity 1 MCT:1000222 percentage of iron concentration in polished grain relative to unpolished grain concentration (+) 2 MCT:1000223 percentage of zinc concentration in polished grain relative to unpolished grain concentration (+) 3 MCT:1000224 nicotianamine concentration (+) 4 MCT:1000225 iron/zinc ratio (+) 5 TO:0006048 manganese concentration (+) 6 TO:0006049 iron concentration (+) 7 TO:0006052 copper concentration (+) 8 TO:0006053 zinc concentration (+) 9 TO:0020089 iron content (+) 10 TO:0020090 zinc content (+) Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Araki Ryoichi; Kousaka Kayoko; Namba Kosuke; Murata Yoshiko; Murata Jun; 2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions. The Plant journal : for cell and molecular biology 2015:81 PMID [25393516] 2  Pereira Margarida P; Santos Carla; Gomes Ana; Vasconcelos Marta W; Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.). Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale 2014:85C PMID [25394797] 3  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79 PMID [24798203] 4  Johnson Alexander A T; Kyriacou Bianca; Callahan Damien L; Carruthers Lorraine; Stangoulis James; Lombi Enzo; Tester Mark; Constitutive Overexpression of the OsNAS Gene Family Reveals Single-Gene Strategies for Effective Iron- and Zinc-Biofortification of Rice Endosperm. Plos One 2011:6 PMID [21915334] 5  Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62 PMID [21112958] 6  Kobayashi Takanori; Ogo Yuko; Aung May Sann; Nozoye Tomoko; Itai Reiko Nakanishi; Nakanishi Hiromi; Yamakawa Takashi; Nishizawa Naoko K; The spatial expression and regulation of transcription factors IDEF1 and IDEF2. Annals of Botany 2010:105 PMID [20197292] 7  Zheng Luqing; Ying Yinghui; Wang Lu; Wang Fang; Whelan James; Shou Huixia; Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biology 2010:10 PMID [20699001] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India