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Searching for LOC_Os03g19427
[nicotianamine synthase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g19427.1 |
333 |
3 |
284 |
PF03059.8 |
NAS |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016740 |
transferase activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009961 |
response to 1-aminocyclopropane-1-carboxylic acid |
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2 |
GO:0010039 |
response to iron ion |
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3 |
GO:0010106 |
cellular response to iron ion starvation |
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4 |
GO:0009058 |
biosynthetic process |
(RGAP) |
5 |
GO:0009987 |
cellular process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005575 |
cellular_component |
(RGAP) |
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007001 |
FR.01 early stage of fruit ripening |
(+) |
3 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000222 |
percentage of iron concentration in polished grain relative to unpolished grain concentration |
(+) |
2 |
MCT:1000223 |
percentage of zinc concentration in polished grain relative to unpolished grain concentration |
(+) |
3 |
MCT:1000224 |
nicotianamine concentration |
(+) |
4 |
TO:0006049 |
iron concentration |
(+) |
5 |
TO:0006053 |
zinc concentration |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Araki Ryoichi; Kousaka Kayoko; Namba Kosuke; Murata Yoshiko; Murata Jun; 2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions. The Plant journal : for cell and molecular biology 2015:81
PMID [25393516]
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2 |
Pereira Margarida P; Santos Carla; Gomes Ana; Vasconcelos Marta W; Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.). Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale 2014:85C
PMID [25394797]
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3 |
Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]
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4 |
Johnson Alexander A T; Kyriacou Bianca; Callahan Damien L; Carruthers Lorraine; Stangoulis James; Lombi Enzo; Tester Mark; Constitutive Overexpression of the OsNAS Gene Family Reveals Single-Gene Strategies for Effective Iron- and Zinc-Biofortification of Rice Endosperm. Plos One 2011:6
PMID [21915334]
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5 |
Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]
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6 |
Sperotto Raul A; Boff Tatiana; Duarte Guilherme L; Santos LÃvia S; Grusak Michael A; Fett Janette P; Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. Journal of Plant Physiology 2010:167
PMID [20580124]
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7 |
Zheng Luqing; Ying Yinghui; Wang Lu; Wang Fang; Whelan James; Shou Huixia; Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biology 2010:10
PMID [20699001]
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