|
Searching for LOC_Os03g20010
[nifU, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g20010.1 |
225 |
81 |
149 |
PF01106.9 |
NifU |
2 |
LOC_Os03g20010.2 |
174 |
81 |
149 |
PF01106.9 |
NifU |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005198 |
structural molecule activity |
(RGAP) |
|
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0009536 |
plastid |
(RGAP) |
|
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007242 |
iron nutrient regimen |
(+) |
2 |
MCE:1000222 |
aluminium chloride regimen (AlCl3) |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
2 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]
 |
|
|
|