Rice gene details
Searching for LOC_Os03g20010 [nifU, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g20010.1 225 81 149 PF01106.9 NifU
2 LOC_Os03g20010.2 174 81 149 PF01106.9 NifU
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0016043 cellular component organization (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY006 root to shoot ratio
2 AQDK011 panicle number
3 CQB4 plant height
4 AQEI053 leaf senescence
5 AQEI088 leaf senescence
6 AQB005 cool paste viscosity
7 AQBX007 panicle weight
8 AQBX008 panicle weight
9 AQBX026 panicle weight
10 AQBX027 panicle weight
11 AQDV017 harvest index
12 AQDV042 plant height
13 AQDV047 panicle length
14 AQDV056 1000-seed weight
15 AQG002 plant height
16 AQG006 panicle length
17 CQAB19 plant height
18 CQAB20 plant height
19 CQAB21 plant height
20 CQAB22 plant height
21 CQAB23 plant height
22 CQAB24 plant height
23 CQAX18 plant height
24 CQZ4 plant height
25 DQE18 leaf rolling
26 AQEL011 root number
27 AQCZ001 seed dormancy
28 AQFT003 osmotic adjustment capacity
29 CQAS27 plant height
30 AQFA007 grain length
31 AQFA014 grain length to width ratio
32 AQFE010 days to heading
33 CQH13 root penetration index
34 CQE17 seed dormancy
35 AQCY062 filled grain number
36 AQGI040 root dry weight
37 AQGI052 root dry weight
38 AQCK001 seed dormancy
39 AQEJ061 leaf area
40 AQEJ063 leaf width
41 AQEJ065 leaf width
42 AQEJ071 leaf width
43 AQEJ073 leaf length to width ratio
44 CQAW8 root number
45 CQE26 carbon content
46 CQE27 grain number
47 CQF5 soluble protein content
48 AQCK007 days to heading
49 CQE16 days to heading
50 AQDQ028 panicle length
51 AQDQ029 panicle length
52 AQAL004 deep root dry weight
53 AQAL010 deep root to shoot ratio
54 AQGC006 penetrated root number
55 AQGC012 penetrated root number
56 AQGC015 root penetration index
57 AQDL005 stomatal closure time
58 AQCO005 spikelet fertility
59 AQCO115 spikelet fertility
60 AQCO118 spikelet fertility
61 AQCP005 spikelet fertility
62 AQCU106 spikelet fertility
63 AQEE021 crushed grain percentage
64 CQX11 panicle length
65 AQDL002 stomatal resistance
66 AQFU015 amylose content
67 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India