Rice gene details
Searching for LOC_Os03g20700 [magnesium-chelatase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g20700.1 1388 248 1369 PF02514.8 CobN-Mg_chel
2 LOC_Os03g20700.2 1388 248 1369 PF02514.8 CobN-Mg_chel
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)
2 GO:0005739 mitochondrion (RGAP)
3 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-2781 cis-zeatin biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFD017 tiller bud dormancy
2 AQBY006 root to shoot ratio
3 AQDK011 panicle number
4 CQB4 plant height
5 AQEI053 leaf senescence
6 AQEI088 leaf senescence
7 AQB005 cool paste viscosity
8 AQBX007 panicle weight
9 AQBX008 panicle weight
10 AQBX026 panicle weight
11 AQBX027 panicle weight
12 AQDV017 harvest index
13 AQDV042 plant height
14 AQDV047 panicle length
15 AQDV056 1000-seed weight
16 AQG002 plant height
17 AQG006 panicle length
18 CQAB19 plant height
19 CQAB20 plant height
20 CQAB21 plant height
21 CQAB22 plant height
22 CQAB23 plant height
23 CQAB24 plant height
24 CQAX18 plant height
25 CQZ4 plant height
26 DQE18 leaf rolling
27 AQEL011 root number
28 AQFT003 osmotic adjustment capacity
29 CQAS27 plant height
30 AQFA007 grain length
31 AQFA014 grain length to width ratio
32 AQFE010 days to heading
33 CQH13 root penetration index
34 CQE17 seed dormancy
35 AQCY062 filled grain number
36 AQGI040 root dry weight
37 AQGI052 root dry weight
38 AQEJ061 leaf area
39 AQEJ063 leaf width
40 AQEJ065 leaf width
41 AQEJ071 leaf width
42 AQEJ073 leaf length to width ratio
43 CQAW8 root number
44 CQE26 carbon content
45 CQE27 grain number
46 CQF5 soluble protein content
47 AQCK007 days to heading
48 CQE16 days to heading
49 AQDQ028 panicle length
50 AQDQ029 panicle length
51 AQAL004 deep root dry weight
52 AQAL010 deep root to shoot ratio
53 AQGC006 penetrated root number
54 AQGC012 penetrated root number
55 AQGC015 root penetration index
56 AQDL005 stomatal closure time
57 AQCO005 spikelet fertility
58 AQCO115 spikelet fertility
59 AQCO118 spikelet fertility
60 AQCP005 spikelet fertility
61 AQCU106 spikelet fertility
62 AQEE021 crushed grain percentage
63 CQX11 panicle length
64 AQDL002 stomatal resistance
65 AQFU015 amylose content
66 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India