Rice gene details
Searching for LOC_Os03g21060 [No apical meristem protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g21060.1 393 9 140 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  4
N22 Root FC
  -1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000975 regulatory region DNA binding  
2 GO:0003677 DNA binding  
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009615 response to virus  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007171 pH regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007332 cold air temperature regimen (+)
9 EO:0007339 rice tungro spherical virus (+)
10 EO:0007409 brassinosteroid (+)
11 MCE:1000023 benzyl aminopurine (BPA) (+)
12 MCE:1000044 mannitol (+)
13 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
14 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFD017 tiller bud dormancy
2 AQBY006 root to shoot ratio
3 AQDK011 panicle number
4 CQB4 plant height
5 AQEI053 leaf senescence
6 AQEI088 leaf senescence
7 AQB005 cool paste viscosity
8 AQBX007 panicle weight
9 AQBX008 panicle weight
10 AQBX026 panicle weight
11 AQBX027 panicle weight
12 AQDV017 harvest index
13 AQDV042 plant height
14 AQDV047 panicle length
15 AQDV056 1000-seed weight
16 AQG002 plant height
17 AQG006 panicle length
18 CQAB19 plant height
19 CQAB20 plant height
20 CQAB21 plant height
21 CQAB22 plant height
22 CQAB23 plant height
23 CQAB24 plant height
24 CQAX18 plant height
25 CQZ4 plant height
26 DQE18 leaf rolling
27 AQEL011 root number
28 AQFT003 osmotic adjustment capacity
29 CQAS27 plant height
30 AQFA007 grain length
31 AQFA014 grain length to width ratio
32 AQFE010 days to heading
33 CQH13 root penetration index
34 CQE17 seed dormancy
35 AQCY062 filled grain number
36 AQGI040 root dry weight
37 AQGI052 root dry weight
38 AQEJ061 leaf area
39 AQEJ063 leaf width
40 AQEJ065 leaf width
41 AQEJ071 leaf width
42 AQEJ073 leaf length to width ratio
43 CQAW8 root number
44 CQE26 carbon content
45 CQE27 grain number
46 CQF5 soluble protein content
47 AQCK007 days to heading
48 CQE16 days to heading
49 AQDQ028 panicle length
50 AQDQ029 panicle length
51 AQAL004 deep root dry weight
52 AQAL010 deep root to shoot ratio
53 AQGC006 penetrated root number
54 AQGC012 penetrated root number
55 AQGC015 root penetration index
56 AQDL005 stomatal closure time
57 AQCO005 spikelet fertility
58 AQCO115 spikelet fertility
59 AQCO118 spikelet fertility
60 AQCP005 spikelet fertility
61 AQCU106 spikelet fertility
62 AQEE021 crushed grain percentage
63 CQX11 panicle length
64 AQDL002 stomatal resistance
65 AQFU015 amylose content
66 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000376 15 days post-anthesis stage (+)
3 MCP:1000454 10 days post-anthesis stage (+)
4 MCP:1000473 20 days post-anthesis stage (+)
5 MCP:1000477 25 days post-anthesis stage (+)
6 MCP:1000505 30 days post-anthesis stage (+)
7 MCP:1000506 40 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 MCP:1000521 mature plant stage (+)
10 MCP:1000552 35 days post-anthesis stage (+)
11 PO:0001053 3 leaf fully expanded (+)
12 PO:0007016 4 flowering (+)
13 PO:0007041 inflorescence emergence from flag leaf sheath (+)
14 PO:0007073 2 formation of axillary shoot (+)
15 PO:0007632 seed maturation stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000553 middle region of leaf (+)
2 PO:0000003 whole plant (+)
3 PO:0006339 juvenile leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (+)
7 PO:0020040 leaf base (+)
8 PO:0020103 flag leaf (+)
9 PO:0020137 leaf apex (+)
10 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000415 early senescence (+)
2 MCT:1000525 delayed senescence (+)
3 TO:0000249 leaf senescence (+)
4 TO:0000382 1000-seed weight (+)
5 TO:0000449 grain yield per plant (+)
6 TO:0000455 seed set percent (+)
7 TO:0000478 abscisic acid concentration (+)
8 TO:0000495 chlorophyll content (+)
9 TO:0000513 potassium concentration (+)
10 TO:0000598 protein content (+)
11 TO:0006044 magnesium concentration (+)
12 TO:0006045 phosphorus concentration (+)
13 TO:0006046 sulfur concentration (+)
14 TO:0006049 iron concentration (+)
15 TO:0006053 zinc concentration (+)
16 TO:0006060 leaf chlorosis (+)
17 TO:0020093 nitrogen content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os03g21060 - --- AAL65399 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
2 LOC_Os03g21060 - --- LOC_Os01g12710 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
3 LOC_Os03g21060 - --- LOC_Os05g39770 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
4 LOC_Os03g21060 - --- LOC_Os06g24730 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
5 LOC_Os03g21060 - --- LOC_Os08g38710 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
6 LOC_Os03g21060 - --- LOC_Os09g36200 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
7 LOC_Os03g21060 - --- LOC_Os10g25030 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
8 LOC_Os03g21060 - --- AAL65399 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
9 LOC_Os03g21060 - --- LOC_Os01g12710 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
10 LOC_Os03g21060 - --- LOC_Os06g24730 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
11 LOC_Os03g21060 - --- LOC_Os09g36200 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
12 LOC_Os03g21060 - --- LOC_Os10g25030 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Liang Chengzhen; Wang Yiqin; Zhu Yana; Tang Jiuyou; Hu Bin; Liu Linchuan; Ou Shujun; Wu Hongkai; Sun Xiaohong; Chu Jinfang; Chu Chengcai; OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice. Proceedings of the National Academy of Sciences of the United States of America 2014:111
PMID [24951508]


Nuruzzaman Mohammed; Manimekalai Ramaswamy; Sharoni Akhter Most; Satoh Kouji; Kondoh Hiroaki; Ooka Hisako; Kikuchi Shoshi; Genome-wide analysis of NAC transcription factor family in rice. Gene 2010:465
PMID [20600702]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India