Rice gene details
Searching for LOC_Os03g21490 [ABC transporter, ATP-binding protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g21490.1 312 91 286 PF00005.19 ABC_tran
2 LOC_Os03g21490.2 312 91 286 PF00005.19 ABC_tran
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0010288 response to lead ion  
6 GO:0006810 transport (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0009056 catabolic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
11 GO:0016043 cellular component organization (RGAP)
12 GO:0000003 reproduction (RGAP)
13 GO:0009791 post-embryonic development (RGAP)
14 GO:0009790 embryo development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000138 lead nitrate regimen (+)
3 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-4302 aerobic respiration -- electron donor III
2 PWY-981 salicylate biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHE034 root thickness
2 AQFT006 root penetration index
3 AQCO002 pollen fertility
4 AQCP002 pollen fertility
5 AQFD017 tiller bud dormancy
6 AQBY006 root to shoot ratio
7 AQDK011 panicle number
8 CQB4 plant height
9 AQEI053 leaf senescence
10 AQEI088 leaf senescence
11 AQB005 cool paste viscosity
12 AQBX007 panicle weight
13 AQBX008 panicle weight
14 AQBX026 panicle weight
15 AQBX027 panicle weight
16 AQDV017 harvest index
17 AQDV042 plant height
18 AQDV047 panicle length
19 AQDV056 1000-seed weight
20 AQG002 plant height
21 AQG006 panicle length
22 CQAB19 plant height
23 CQAB20 plant height
24 CQAB21 plant height
25 CQAB22 plant height
26 CQAB23 plant height
27 CQAB24 plant height
28 CQAX18 plant height
29 CQZ4 plant height
30 DQE18 leaf rolling
31 AQEL011 root number
32 CQAS27 plant height
33 AQFA007 grain length
34 AQFA014 grain length to width ratio
35 AQFE010 days to heading
36 CQH13 root penetration index
37 CQE17 seed dormancy
38 AQCY062 filled grain number
39 AQGI040 root dry weight
40 AQGI052 root dry weight
41 AQEJ061 leaf area
42 AQEJ063 leaf width
43 AQEJ065 leaf width
44 AQEJ071 leaf width
45 AQEJ073 leaf length to width ratio
46 CQAW8 root number
47 CQE26 carbon content
48 CQE27 grain number
49 CQF5 soluble protein content
50 AQCK007 days to heading
51 CQE16 days to heading
52 AQAL004 deep root dry weight
53 AQAL010 deep root to shoot ratio
54 AQGC006 penetrated root number
55 AQGC012 penetrated root number
56 AQGC015 root penetration index
57 AQDL005 stomatal closure time
58 AQCU106 spikelet fertility
59 AQEE021 crushed grain percentage
60 CQX11 panicle length
61 AQFU015 amylose content
62 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India