Rice gene details
Searching for LOC_Os03g22700 [cyclin-dependent kinase C-2, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g22700.1 404 3 241 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  7
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
Biological process
Not found
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007204 1-naphthaleneacetic acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED021 panicle length
2 AQED022 panicle length
3 AQGE016 cooked kernel elongation
4 AQGI176 biomass yield
5 AQED032 grain number
6 AQED033 spikelet number
7 AQED034 spikelet number
8 AQBG008 white-backed planthopper resistance
9 AQHE034 root thickness
10 AQFT006 root penetration index
11 AQFD017 tiller bud dormancy
12 AQBY006 root to shoot ratio
13 AQDK011 panicle number
14 CQB4 plant height
15 AQB005 cool paste viscosity
16 AQBX007 panicle weight
17 AQBX008 panicle weight
18 AQBX026 panicle weight
19 AQBX027 panicle weight
20 AQDV017 harvest index
21 AQDV042 plant height
22 AQDV047 panicle length
23 AQDV056 1000-seed weight
24 AQG002 plant height
25 AQG006 panicle length
26 CQAB19 plant height
27 CQAB20 plant height
28 CQAB21 plant height
29 CQAB22 plant height
30 CQAB23 plant height
31 CQAB24 plant height
32 CQAX18 plant height
33 CQZ4 plant height
34 DQE18 leaf rolling
35 CQAS27 plant height
36 AQFA007 grain length
37 AQFA014 grain length to width ratio
38 CQH13 root penetration index
39 CQE17 seed dormancy
40 AQEJ061 leaf area
41 AQEJ063 leaf width
42 AQEJ065 leaf width
43 AQEJ071 leaf width
44 AQEJ073 leaf length to width ratio
45 CQAW8 root number
46 CQE26 carbon content
47 CQE27 grain number
48 CQF5 soluble protein content
49 AQCK007 days to heading
50 CQE16 days to heading
51 AQAL004 deep root dry weight
52 AQAL010 deep root to shoot ratio
53 AQGC006 penetrated root number
54 AQGC012 penetrated root number
55 AQGC015 root penetration index
56 AQDL005 stomatal closure time
57 AQCU106 spikelet fertility
58 AQFU015 amylose content
59 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhao Heming; Ma Tengfei; Wang Xin; Deng Yingtian; Ma Haoli; Zhang Rongsheng; Zhao Jie; OsAUX1 controls lateral root initiation in rice (Oryza sativa L.). Plant, cell & environment 2014:
PMID [25311360]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India