Rice gene details
Searching for LOC_Os03g22780 [DVR, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g22780.1 406 75 105 PF05368.5 NmrA
2 LOC_Os03g22780.1 406 216 302 PF05368.5 NmrA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 TRNA-CHARGING-PWY tRNA charging pathway

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBU001 green leafhopper resistance
2 AQDY053 panicle length
3 AQED021 panicle length
4 AQED022 panicle length
5 AQGE016 cooked kernel elongation
6 AQGI176 biomass yield
7 AQED032 grain number
8 AQED033 spikelet number
9 AQED034 spikelet number
10 AQBG008 white-backed planthopper resistance
11 AQHE034 root thickness
12 AQFT006 root penetration index
13 AQFD017 tiller bud dormancy
14 AQBY006 root to shoot ratio
15 AQDK011 panicle number
16 CQB4 plant height
17 AQB005 cool paste viscosity
18 AQBX007 panicle weight
19 AQBX008 panicle weight
20 AQBX026 panicle weight
21 AQBX027 panicle weight
22 AQDV017 harvest index
23 AQDV042 plant height
24 AQDV047 panicle length
25 AQDV056 1000-seed weight
26 AQG002 plant height
27 AQG006 panicle length
28 CQAB19 plant height
29 CQAB20 plant height
30 CQAB21 plant height
31 CQAB22 plant height
32 CQAB23 plant height
33 CQAB24 plant height
34 CQAX18 plant height
35 CQZ4 plant height
36 DQE18 leaf rolling
37 CQAS27 plant height
38 AQFA007 grain length
39 AQFA014 grain length to width ratio
40 CQH13 root penetration index
41 CQE17 seed dormancy
42 AQEJ061 leaf area
43 AQEJ063 leaf width
44 AQEJ065 leaf width
45 AQEJ071 leaf width
46 AQEJ073 leaf length to width ratio
47 CQAW8 root number
48 CQE26 carbon content
49 CQE27 grain number
50 CQF5 soluble protein content
51 AQCK007 days to heading
52 CQE16 days to heading
53 AQAL004 deep root dry weight
54 AQAL010 deep root to shoot ratio
55 AQGC006 penetrated root number
56 AQGC012 penetrated root number
57 AQGC015 root penetration index
58 AQDL005 stomatal closure time
59 AQCU106 spikelet fertility
60 AQFU015 amylose content
61 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India