Rice gene details
Searching for LOC_Os03g22810 [copper/zinc superoxide dismutase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g22810.1 271 119 270 PF00080.12 Sod_Cu
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010272 response to silver ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0009607 response to biotic stimulus (RGAP)
6 GO:0008150 biological_process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005576 extracellular region (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 MCE:1000226 panhematin (hemin) (+)
3 MCE:1000294 ammonium chloride (NH4) (+)
4 MCE:1000340 silver nanoparticles (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 RIBOSYN2-PWY flavin biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBU001 green leafhopper resistance
2 AQDY053 panicle length
3 AQED021 panicle length
4 AQED022 panicle length
5 AQGE016 cooked kernel elongation
6 AQGI176 biomass yield
7 AQED032 grain number
8 AQED033 spikelet number
9 AQED034 spikelet number
10 AQBG008 white-backed planthopper resistance
11 AQHE034 root thickness
12 AQFT006 root penetration index
13 AQFD017 tiller bud dormancy
14 AQBY006 root to shoot ratio
15 AQDK011 panicle number
16 CQB4 plant height
17 AQB005 cool paste viscosity
18 AQBX007 panicle weight
19 AQBX008 panicle weight
20 AQBX026 panicle weight
21 AQBX027 panicle weight
22 AQDV017 harvest index
23 AQDV042 plant height
24 AQDV047 panicle length
25 AQDV056 1000-seed weight
26 AQG002 plant height
27 AQG006 panicle length
28 CQAB19 plant height
29 CQAB20 plant height
30 CQAB21 plant height
31 CQAB22 plant height
32 CQAB23 plant height
33 CQAB24 plant height
34 CQAX18 plant height
35 CQZ4 plant height
36 DQE18 leaf rolling
37 CQAS27 plant height
38 AQFA007 grain length
39 AQFA014 grain length to width ratio
40 CQH13 root penetration index
41 CQE17 seed dormancy
42 AQEJ061 leaf area
43 AQEJ063 leaf width
44 AQEJ065 leaf width
45 AQEJ071 leaf width
46 AQEJ073 leaf length to width ratio
47 CQAW8 root number
48 CQE26 carbon content
49 CQE27 grain number
50 CQF5 soluble protein content
51 AQCK007 days to heading
52 CQE16 days to heading
53 AQAL004 deep root dry weight
54 AQAL010 deep root to shoot ratio
55 AQGC006 penetrated root number
56 AQGC012 penetrated root number
57 AQGC015 root penetration index
58 AQDL005 stomatal closure time
59 AQCU106 spikelet fertility
60 AQFU015 amylose content
61 AQFC001 elongation ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000006 plant protoplast (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xie Yanjie; Mao Yu; Xu Sheng; Zhou Heng; Duan Xingliang; Cui Weiti; Zhang Jing; Xu Guohua; Heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa. Plant, cell & environment 2015:38
PMID [24905845]


Nair Prakash M Gopalakrishnan; Chung Ill Min; Physiological and molecular level effects of silver nanoparticles exposure in rice (Oryza sativa L.) seedlings. Chemosphere 2014:112
PMID [25048895]


Shi Ben; Ni Lan; Liu Yanpei; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice. Plant, cell & environment 2014:37
PMID [23777258]


Wen Feng; Qin Tingting; Wang Yao; Dong Wen; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice. Journal of integrative plant biology 2014:
PMID [24912543]


Shi Ben; Ni Lan; Zhang Aying; Cao Jianmei; Zhang Hong; Qin Tingting; Tan Mingpu; Zhang Jianhua; Jiang Mingyi; OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice. Molecular plant 2012:5
PMID [22869603]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India