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Searching for LOC_Os03g27770
[heme oxygenase 2, putative, expressed ] |
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Basic information [Interpro DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
1 |
LOC_Os03g27770.1 |
331 |
1 |
330 |
IPR016951 |
Heme oxygenase (decyclizing), plant type |
2 |
LOC_Os03g27770.1 |
331 |
2 |
30 |
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seg |
3 |
LOC_Os03g27770.1 |
331 |
49 |
84 |
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seg |
4 |
LOC_Os03g27770.1 |
331 |
92 |
328 |
IPR016084 |
Heme oxygenase-like |
5 |
LOC_Os03g27770.1 |
331 |
122 |
156 |
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seg |
6 |
LOC_Os03g27770.1 |
331 |
123 |
328 |
IPR016084 |
no description |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0009536 |
plastid |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000351 |
5-aminolevulinic acid |
(+) |
2 |
MCE:1000352 |
oxyfluorfen |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
CALVIN-PWY |
Calvin cycle |
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2 |
GLUCONEO-PWY |
gluconeogenesis |
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3 |
PWY-1042 |
glycolysis IV (plant cytosol) |
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4 |
PWY-2781 |
cis-zeatin biosynthesis |
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5 |
PWY-3801 |
sucrose degradation to ethanol and lactate (anaerobic) |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007055 |
0.0 dry seed |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]
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2 |
Xu Sheng; Wang Lijuan; Zhang Bo; Han Bin; Xie Yanjie; Yang Jie; Zhong Weigong; Chen Huiping; Wang Ren; Wang Ning; Cui Weiti; Shen Wenbiao; RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense. Plant Molecular Biology 2012:
PMID [22829206]
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