Rice gene details
Searching for LOC_Os03g36540 [magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g36540.1 416 81 288 PF01078.13 Mg_chelatase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0009056 catabolic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQF008 seed dormancy
2 AQF026 seed dormancy
3 AQF043 awn length
4 AQF060 anther length
5 CQAH11 seed dormancy
6 CQAH12 seed dormancy
7 AQDY056 panicle length
8 AQDY058 panicle length
9 AQGJ020 leaf nitrogen content
10 AQHE004 root length
11 DQC15 penetrated to total root ratio
12 DQC8 penetrated root number
13 AQDY054 panicle length
14 AQFE071 100-grain weight
15 AQFE072 100-grain weight
16 AQFE073 100-grain weight
17 CQE18 yield
18 AQDY051 culm length
19 AQED021 panicle length
20 AQED022 panicle length
21 AQBG008 white-backed planthopper resistance
22 CQAS27 plant height
23 AQFA007 grain length
24 AQFA014 grain length to width ratio
25 CQE17 seed dormancy
26 CQE26 carbon content
27 CQE27 grain number
28 CQF5 soluble protein content
29 AQCK007 days to heading
30 CQE16 days to heading
31 AQAL004 deep root dry weight
32 AQAL010 deep root to shoot ratio
33 AQGC006 penetrated root number
34 AQGC012 penetrated root number
35 AQGC015 root penetration index
36 AQDL005 stomatal closure time
37 AQCU106 spikelet fertility
38 AQDV003 biomass yield
39 AQDV018 harvest index
40 AQDV043 plant height
41 AQEP003 seedling vigor
42 AQEP004 seedling vigor
43 AQFA006 cooked kernel elongation
44 DQE37 relative growth rate
45 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India