Rice gene details
Searching for LOC_Os03g40270 [alpha-1,4-glucan-protein synthase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g40270.1 365 13 356 PF03214.5 RGP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -7
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0007275 multicellular organismal development (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0008150 biological_process (RGAP)
7 GO:0006950 response to stress (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005618 cell wall (RGAP)
3 GO:0005794 Golgi apparatus (RGAP)
4 GO:0005829 cytosol (RGAP)
5 GO:0005840 ribosome (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 AQFA007 grain length
15 AQFA014 grain length to width ratio
16 CQE26 carbon content
17 CQE27 grain number
18 CQF5 soluble protein content
19 AQAL004 deep root dry weight
20 AQAL010 deep root to shoot ratio
21 AQGC006 penetrated root number
22 AQGC012 penetrated root number
23 AQGC015 root penetration index
24 AQDL005 stomatal closure time
25 AQCU106 spikelet fertility
26 AQF008 seed dormancy
27 AQF026 seed dormancy
28 AQF043 awn length
29 AQF060 anther length
30 CQAH11 seed dormancy
31 CQAH12 seed dormancy
32 AQDV003 biomass yield
33 AQDV018 harvest index
34 AQDV043 plant height
35 AQEP003 seedling vigor
36 AQEP004 seedling vigor
37 AQFA006 cooked kernel elongation
38 DQE37 relative growth rate
39 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000567 0-1 mm floret length stage (-)
2 MCP:1000568 1-2 mm floret length stage (-)
3 MCP:1000569 2-4 mm floret length stage (-)
4 MCP:1000570 4-6 mm floret length stage (-)
5 MCP:1000571 6-7 mm floret length stage (-)
6 MCP:1000572 7 mm floret length stage (-)
7 PO:0001052 2 leaf expansion stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005005 shoot internode (+)
2 PO:0006340 adult leaf (+)
3 PO:0009005 root (+)
4 PO:0009030 carpel (+)
5 PO:0009037 lemma (+)
6 PO:0009038 palea (+)
7 PO:0009066 anther (+)
8 PO:0020104 leaf sheath (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sumiyoshi Minako; Inamura Takuya; Nakamura Atsuko; Aohara Tsutomu; Ishii Tadashi; Satoh Shinobu; Iwai Hiroaki; UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa). Plant & cell physiology 2015:56
PMID [25261533]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India