Rice gene details
Searching for LOC_Os03g40500 [transposon protein, putative, CACTA, En/Spm sub-class ]
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os03g40500.1 640 363 421 seg
2 LOC_Os03g40500.1 640 424 453 seg
3 LOC_Os03g40500.1 640 547 611 Cysteine proteinases
4 LOC_Os03g40500.1 640 632 636 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 AQFA007 grain length
15 AQFA014 grain length to width ratio
16 CQE26 carbon content
17 CQE27 grain number
18 CQF5 soluble protein content
19 AQAL004 deep root dry weight
20 AQAL010 deep root to shoot ratio
21 AQGC006 penetrated root number
22 AQGC012 penetrated root number
23 AQGC015 root penetration index
24 AQDL005 stomatal closure time
25 AQCU106 spikelet fertility
26 AQF008 seed dormancy
27 AQF026 seed dormancy
28 AQF043 awn length
29 AQF060 anther length
30 CQAH11 seed dormancy
31 CQAH12 seed dormancy
32 AQDV003 biomass yield
33 AQDV018 harvest index
34 AQDV043 plant height
35 AQEP003 seedling vigor
36 AQEP004 seedling vigor
37 AQFA006 cooked kernel elongation
38 DQE37 relative growth rate
39 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India