Rice gene details
Searching for LOC_Os03g40540 [cytochrome P450, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g40540.1 470 35 169 PF00067.14 p450
2 LOC_Os03g40540.1 470 218 465 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0019825 oxygen binding (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006629 lipid metabolic process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007162 continuous light regimen (+)
3 EO:0007270 continuous dark (no light) regimen (+)
4 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 AQFA007 grain length
15 AQFA014 grain length to width ratio
16 CQE26 carbon content
17 CQE27 grain number
18 CQF5 soluble protein content
19 AQAL004 deep root dry weight
20 AQAL010 deep root to shoot ratio
21 AQGC006 penetrated root number
22 AQGC012 penetrated root number
23 AQGC015 root penetration index
24 AQDL005 stomatal closure time
25 AQCU106 spikelet fertility
26 AQF008 seed dormancy
27 AQF026 seed dormancy
28 AQF043 awn length
29 AQF060 anther length
30 CQAH11 seed dormancy
31 CQAH12 seed dormancy
32 AQDV003 biomass yield
33 AQDV018 harvest index
34 AQDV043 plant height
35 AQEP003 seedling vigor
36 AQEP004 seedling vigor
37 AQFA006 cooked kernel elongation
38 DQE37 relative growth rate
39 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sakamoto Tomoaki; Morinaka Yoichi; Inukai Yoshiaki; Kitano Hidemi; Fujioka Shozo; Auxin signal transcription factor regulates expression of brassinosteroid receptor gene in rice. The Plant journal 2012:
PMID [23146214]


2  Sakamoto Tomoaki; Kawabe Ayami; Tokida-Segawa Asako; Shimizu Bun-Ichi; Takatsuto Suguru; Shimada Yukihisa; Fujioka Shozo; Mizutani Masaharu; Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism. The Plant journal 2011:
PMID [21418356]


3  Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India