Rice gene details
Searching for LOC_Os03g42880 [nucleotide-binding protein-like, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g42880.1 169 16 96 PF10609.1 ParA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 CQE26 carbon content
15 CQE27 grain number
16 CQF5 soluble protein content
17 AQAL004 deep root dry weight
18 AQAL010 deep root to shoot ratio
19 AQGC006 penetrated root number
20 AQGC012 penetrated root number
21 AQGC015 root penetration index
22 AQDL005 stomatal closure time
23 AQF008 seed dormancy
24 AQF026 seed dormancy
25 AQF043 awn length
26 AQF060 anther length
27 CQAH11 seed dormancy
28 CQAH12 seed dormancy
29 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India