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Searching for LOC_Os03g43400
[OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g43400.1 |
234 |
4 |
227 |
PF02309.8 |
AUX_IAA |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009416 |
response to light stimulus |
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2 |
GO:0009733 |
response to auxin stimulus |
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3 |
GO:0009739 |
response to gibberellin stimulus |
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4 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
5 |
GO:0009058 |
biosynthetic process |
(RGAP) |
6 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000508 |
nucleus |
(+) |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000459 |
protein degradation percentage |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]
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2 |
Kang Bo; Zhang Zhongchen; Wang Lingling; Zheng Libin; Mao Weihua; Li Meifei; Wu Yunrong; Wu Ping; Mo Xiaorong; OsCYP2, a chaperone involved in AUX/IAA degradation, plays crucial roles in rice lateral root initiation. The Plant journal 2013:
PMID [23289750]
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3 |
Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]
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4 |
Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]
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