Rice gene details
Searching for LOC_Os03g43400 [OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g43400.1 234 4 227 PF02309.8 AUX_IAA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -96
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -2
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0009739 response to gibberellin stimulus  
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
7 EO:0007204 1-naphthaleneacetic acid (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007404 drought environment (+)
10 MCE:1000038 cycloheximide (+)
11 MCE:1000063 epibrassinolide (+)
12 MCE:1000203 dark regimen (+)
13 MCE:1000347 alginate oligosaccharide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 CQE26 carbon content
15 CQE27 grain number
16 CQF5 soluble protein content
17 AQAL004 deep root dry weight
18 AQAL010 deep root to shoot ratio
19 AQGC006 penetrated root number
20 AQGC012 penetrated root number
21 AQGC015 root penetration index
22 AQDL005 stomatal closure time
23 AQF008 seed dormancy
24 AQF026 seed dormancy
25 AQF043 awn length
26 AQF060 anther length
27 CQAH11 seed dormancy
28 CQAH12 seed dormancy
29 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009046 flower (+)
6 PO:0020033 coleoptile (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000508 nucleus (+)

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000459 protein degradation percentage (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]


Kang Bo; Zhang Zhongchen; Wang Lingling; Zheng Libin; Mao Weihua; Li Meifei; Wu Yunrong; Wu Ping; Mo Xiaorong; OsCYP2, a chaperone involved in AUX/IAA degradation, plays crucial roles in rice lateral root initiation. The Plant journal 2013:
PMID [23289750]


Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]


Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India