Rice gene details
Searching for LOC_Os03g44230 [transmembrane amino acid transporter protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g44230.1 474 59 459 PF01490.10 Aa_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -3
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009651 response to salt stress  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 CQE26 carbon content
15 CQE27 grain number
16 CQF5 soluble protein content
17 AQAL004 deep root dry weight
18 AQAL010 deep root to shoot ratio
19 AQGC006 penetrated root number
20 AQGC012 penetrated root number
21 AQGC015 root penetration index
22 AQDL005 stomatal closure time
23 AQF008 seed dormancy
24 AQF026 seed dormancy
25 AQF043 awn length
26 AQF060 anther length
27 CQAH11 seed dormancy
28 CQAH12 seed dormancy
29 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


2  Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]


3  Sun Shu-Jing; Guo Shu-Qiao; Yang Xia; Bao Yong-Mei; Tang Hai-Juan; Sun Hui; Huang Ji; Zhang Hong-Sheng; Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Journal of Experimental Botany 2010:61
PMID [20460361]


4  Huang Ji; Sun Shu-Jing; Xu Dong-Qing; Yang Xia; Bao Yong-Mei; Wang Zhou-Fei; Tang Hai-Juan; Zhang Hongsheng; Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochemical and Biophysical Research Communications 2009:389
PMID [19751706]


5  Xu Dong-Qing; Huang Ji; Guo Shu-Qiao; Yang Xia; Bao Yong-Mei; Tang Hai-Juan; Zhang Hong-Sheng; Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.). FEBS Letters 2008:582
PMID [18325341]


6  Xiang Yong; Huang Yuemin; Xiong Lizhong; Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiology 2007:144
PMID [17535819]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India