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Searching for LOC_Os03g44230
[transmembrane amino acid transporter protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g44230.1 |
474 |
59 |
459 |
PF01490.10 |
Aa_trans |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005215 |
transporter activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
EO:0007174 |
cold temperature regimen |
(+) |
4 |
EO:0007332 |
cold air temperature regimen |
(+) |
5 |
EO:0007404 |
drought environment |
(+) |
6 |
MCE:1000075 |
recovery treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007115 |
LP.04 four leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0000003 |
whole plant |
(+) |
2 |
PO:0008037 |
seedling |
(+) |
3 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]
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2 |
Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]
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3 |
Sun Shu-Jing; Guo Shu-Qiao; Yang Xia; Bao Yong-Mei; Tang Hai-Juan; Sun Hui; Huang Ji; Zhang Hong-Sheng; Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Journal of Experimental Botany 2010:61
PMID [20460361]
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4 |
Huang Ji; Sun Shu-Jing; Xu Dong-Qing; Yang Xia; Bao Yong-Mei; Wang Zhou-Fei; Tang Hai-Juan; Zhang Hongsheng; Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochemical and Biophysical Research Communications 2009:389
PMID [19751706]
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5 |
Xu Dong-Qing; Huang Ji; Guo Shu-Qiao; Yang Xia; Bao Yong-Mei; Tang Hai-Juan; Zhang Hong-Sheng; Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.). FEBS Letters 2008:582
PMID [18325341]
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6 |
Xiang Yong; Huang Yuemin; Xiong Lizhong; Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiology 2007:144
PMID [17535819]
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