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Searching for LOC_Os03g44440
[cyclic nucleotide-gated ion channel, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g44440.1 |
712 |
136 |
406 |
PF00520.23 |
Ion_trans |
2 |
LOC_Os03g44440.1 |
712 |
507 |
607 |
PF00027.21 |
cNMP_binding |
3 |
LOC_Os03g44440.1 |
712 |
626 |
646 |
PF00612.19 |
IQ |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0016020 |
membrane |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007068 |
ethylene regimen |
(+) |
2 |
EO:0007070 |
indole acetic acid regimen |
(+) |
3 |
EO:0007105 |
abscisic acid regimen |
(+) |
4 |
EO:0007198 |
water environment |
(+) |
5 |
EO:0007234 |
Pseudomonas fuscovaginae |
(+) |
6 |
EO:0007257 |
Xanthomonas oryzae pv. oryzae |
(+) |
7 |
EO:0007290 |
kinetin regimen |
(+) |
8 |
EO:0007332 |
cold air temperature regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]
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