Rice gene details
Searching for LOC_Os03g45194 [oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g45194.1 557 74 155 PF00106.17 adh_short
2 LOC_Os03g45194.1 557 387 441 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0019538 protein metabolic process (RGAP)
2 GO:0009056 catabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 CQE18 yield
4 CQAS27 plant height
5 CQE26 carbon content
6 CQE27 grain number
7 CQF5 soluble protein content
8 AQAL004 deep root dry weight
9 AQAL010 deep root to shoot ratio
10 AQGC006 penetrated root number
11 AQGC012 penetrated root number
12 AQGC015 root penetration index
13 AQF008 seed dormancy
14 AQF026 seed dormancy
15 AQF043 awn length
16 AQF060 anther length
17 CQAH11 seed dormancy
18 CQAH12 seed dormancy
19 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India